Xate030017.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730486.1:15888119-15895084[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-11 2e-07 31.5 0.0 1 38 456 494 456 499 0.90 2 4 6.8e-14 1.7e-10 41.3 0.1 2 39 511 548 510 551 0.94 3 4 6e-18 1.5e-14 54.2 0.0 1 45 565 610 565 610 0.98 4 4 1.8e-18 4.6e-15 55.9 0.0 1 44 617 661 617 661 0.96
Sequence Information
- Coding Sequence
- ATGTATTCGCAAAAAATGTGTTCTGGTCTTGCACGCTCTCTTGGTCTGGACATTCCTTCATATAAGggTCTACTGCGAACAGCAGAACAGCTTAAAATTAAAGGTCTATGTGAAACTGCCGAAACAACAGATGAAGGTTCAACAGAAACAGCTACAACAACGACAATAACATTGCCAGAATCGTTAGCAAATATTGCGACTACCAATAATCATTTAATTGCAAATCACGGTAACGGTGGTGGAAATATAGCACAGAGAAAATCACGTGTAAGAAAACGTTCAAAATCACCAGATACAAATTCAATAAATCTTGGAAATCAATCTTACACAACTTCAACAATTGTGAATTTAAATCAAACGGCAGCGGCAACAATAACATCATCAAATTCAACAATATCTGGTGGTGGAGGAAATTCAtcgacaacatcatcatcatcgtcggCGGCGgctcattatcatcatcatcaacatcatcatcacaCCCAAAATCAACAACAATTAACTATATCAAATTCTGGTATTGGTGATAACGGTTCAGACGATAATATATCGTCAAATCCGGCAAAAATTTGCAAAACTGAAGATTCAAATAATGGAAGTGGAGTTGTTGGCTCGGGCGCTGCTATTGTAACACAAATTGTAGTTGCACGTGAAGGAAAAGATAAGAATATGACGAGTTTGGGAATGGGAATGaatggaGGAATTTTAGGAGTACCAATGGGATTTTTAGATTTTGCACCAGAACCACCAGCACCATCAGCGACACCAGTCACAGAACATGTTGATATGTCTTGTACACCGAGTACAGATACAAGAGACTTATCGAATCCCACCGAAGCGCTCGATATAGACAATCAGATAGCCCATCATATAATTCAACGATTAGAAGAATCACCAATCCATCAAATGCAACATCAACAATCATCGGATGataataattctaatttaatacaaaatattaagaGCGAAGTGGACGTAAAACATCATATTCAGCAACATCAACAACACCAACAAGAATTAGAACGACAAATACAAGAAcaccaacaacagcaacaacaacaacagcaacaacaacaacaaagcCATCAACAAAttcagcaacaacaacaaagtCATCATCAAGAAATTTCAGCTACATCAGTAATGGAAATCGATCCGAGTAATATAAAACATGAACCTGGAATGATAATAACTCCAGAAATAGTAACAATGATGACCACTGGACATATGGATATTTATAATTCCGATACTAGTGAAGATTCTCTTATGATAGCAAATGGTTCACCAAATGATAATAGTGAACCACATTATACAAATTTAGATCAACAGCATGATTTGAAAGGTCTTAACGGACCAAAAACATGGACACAAGAAGATATGAATTCAGCTTTAGATGcattaaaaaatcataatatGAGTTTAACAAAAGCTTCAGTTACATATGGTATACCATCCACAACTTTATGGCAGAGAGCACATCGTATGGGTATTGATACACCGAAAAAAGAAGGTTCAACAAAATCATGGAATGAAGATGCTCTAAATAGTGCATTAGAGGCATTACGAACTGGACAAATTTCGGCAAATAAAGCTTCAAAGGCATATGGTATTCCGTCCTcaacattatataaaattgCCAGACGTGAGGGTATCCGATTGGCGGCACCATTTAATGCTGCACCAACAACATGGACTCCCGAAGATTTAGAACGTGCATTAGAAGCAATTCGTGCTGGTCACACTTCCGTCCAAAAAGCAAGCACTGAATTTGGTATACCAACAGGAACACTTTATGGTCGATGTAAACGAGAAGGTATTGAATTATCCCGTTCGAATCCAACACCATGGTCAGAAGATGCTATGAATGAAGCTCTAGTAGCAGTAAgagtggGACATATGTCAATAAATCAGGCAGCTATACATTATAATTTACCGTATAGCTCATTATATGGTCGTTTTAAACGTGGAAAATATGATACAAGTGGAACAACAACGACAACCACAAATGTTGTTGGTGGTAGCACAAATTCAAGTGGAAATTTAGAAATGATTGAACATAGTCCTGAAAATTcgttACATCTGTTTCAGCAATTTCAATATAGTCCAGGACCTTCGAatacacaacaacaacaacaacaacagcaacagcaacagcaacaacaatctCATCAACAGAATctacaacaacagcaacaacaacaacaacaaaatcaacaacagcaacaacatcaCATTcaacatcatcaacaacatCAACAGCAAGATGTCGTTACATCGACAAGTCAAGTTCataatcaaaataatcaaattcAAACAACACAAATTCAACAAATCTATCATCATCATAGTACACCGGAAAGAAGTTGA
- Protein Sequence
- MYSQKMCSGLARSLGLDIPSYKGLLRTAEQLKIKGLCETAETTDEGSTETATTTTITLPESLANIATTNNHLIANHGNGGGNIAQRKSRVRKRSKSPDTNSINLGNQSYTTSTIVNLNQTAAATITSSNSTISGGGGNSSTTSSSSSAAAHYHHHQHHHHTQNQQQLTISNSGIGDNGSDDNISSNPAKICKTEDSNNGSGVVGSGAAIVTQIVVAREGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSTDTRDLSNPTEALDIDNQIAHHIIQRLEESPIHQMQHQQSSDDNNSNLIQNIKSEVDVKHHIQQHQQHQQELERQIQEHQQQQQQQQQQQQQSHQQIQQQQQSHHQEISATSVMEIDPSNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNSEPHYTNLDQQHDLKGLNGPKTWTQEDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGSTKSWNEDALNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTSGTTTTTTNVVGGSTNSSGNLEMIEHSPENSLHLFQQFQYSPGPSNTQQQQQQQQQQQQQQSHQQNLQQQQQQQQQNQQQQQHHIQHHQQHQQQDVVTSTSQVHNQNNQIQTTQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -