Xvio002967.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- grn
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000004.1:39602304-39616826[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-18 5.8e-15 54.8 5.6 1 35 60 93 60 94 0.97
Sequence Information
- Coding Sequence
- ATGCCGGTTATCACCGCTTTACCAGCACGGTATCAAAGTGGCAAGGCTGGCCACCTTGCCCTAATAAGCCCGAACAGGATATTCAATCCTGTCCTGTTGTCGGCGTGCCGTGCCGTGCCTAGCCGCGCGTTGTATATATTGTGTCCCGACAGTGCGGCGAGGCGGGCGGGCACCAGCTGCGCCAACTGCAAGACCGCGACCACCACGCTCTGGCGGAGGAACCAGGCCGGGGAGCCAGTCTGCAACGCGTGCGGCCTCTACTACAAGCTGCACAACGTGAACCGGCCGCTCACGATGAAGAAGGAGGGCATCCAGACGAGGAACAGAAAGCTGTCGTCGAAGAgcaagaagaagaaggcgggcGGCTGCTTGGGACTCGGCGGCGTGATGGGCGATATGATCAAGGCCAGCGGTCACCTCGATCTCGACAACAAGCCCTTCCACTCGGGCTTCGGCTCGCCCATGGGCACGTCGCAGCATCATCACACGATGCATCCAGCGATGCAACACTACATGTACCACACGGGGGTAGGGGTGGCCGGTGGTCTCCACCAAGGATTCGCGCCCCCGGCACCGCCGCCGATCCACCCTCACTCGCACTCGCACTCCCATTCCCATCACATGCCGAGTCTTCAGGGTCTACAGCTGGCCACGACGAACGCGATGACCGGTTGGCGATCGGAGTACACGTGA
- Protein Sequence
- MPVITALPARYQSGKAGHLALISPNRIFNPVLLSACRAVPSRALYILCPDSAARRAGTSCANCKTATTTLWRRNQAGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKAGGCLGLGGVMGDMIKASGHLDLDNKPFHSGFGSPMGTSQHHHTMHPAMQHYMYHTGVGVAGGLHQGFAPPAPPPIHPHSHSHSHSHHMPSLQGLQLATTNAMTGWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412767;
- 90% Identity
- -
- 80% Identity
- -