Xvio010071.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- -
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000014.1:13854664-13859988[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1 81 4.1 4.5 2 21 102 121 102 122 0.93 2 16 0.025 2 9.2 2.3 1 22 127 148 127 148 0.96 3 16 0.00012 0.0097 16.5 3.0 2 23 525 547 524 547 0.95 4 16 8.3 6.7e+02 1.3 1.0 5 23 554 573 553 573 0.93 5 16 0.47 38 5.2 4.4 2 23 580 601 579 601 0.95 6 16 0.018 1.5 9.6 5.0 1 21 628 648 628 649 0.95 7 16 0.034 2.7 8.8 1.6 1 20 781 800 781 802 0.93 8 16 0.0025 0.2 12.3 0.3 2 23 810 832 810 832 0.93 9 16 0.0051 0.42 11.3 3.3 3 23 844 865 842 865 0.94 10 16 5.7 4.7e+02 1.8 0.1 3 19 886 902 885 905 0.89 11 16 0.005 0.41 11.4 4.3 1 23 946 969 946 969 0.94 12 16 0.057 4.6 8.1 0.0 1 19 1009 1027 1009 1029 0.94 13 16 0.0034 0.27 11.9 2.1 1 23 1037 1060 1037 1060 0.94 14 16 0.0029 0.23 12.1 1.5 2 20 1128 1146 1127 1148 0.93 15 16 0.0058 0.47 11.2 0.9 1 23 1155 1177 1155 1177 0.97 16 16 0.0043 0.35 11.6 1.7 1 23 1185 1208 1185 1208 0.93
Sequence Information
- Coding Sequence
- ATGGCTCGTACTTTAATCTACACACGTTCTGTAGATGCAATCTTTGTAGGTACAAACTTGGATCACAATTCAGATCCATATAATGTGAAGCAAGGTTTGTTCAATTCTATTAGTGAAAATACATCTgctaatataaatataaaattcaAAAATAAAAAGCAAAATAAGGCAGTAGAATCCGAAGTGACAATTGCAGATGATAGTAATTATAAAAACAAAAAATCAAGATCTGAAGCACCTGTTTATttaaagaataatggatttAATCCTGATGCAGAAGAATGTATACATGAACATTCTGCAACCTGTAGTGTTTGTTTCAGACATTTTCATAGTTATCATGCATTAAAAATTCATAAAAATAAGAATAAAAGCCAGTATAAGTGTAATAGATGTAATGCAACATTTGTTGTATTAAGTTCATGCAAAAGACATATGAAAATGGGTTGTACCGCAAGGATTACATCTAACCCAAAGTGTGGTTATACTTGTCATTTTTGTAATCGATTTCATAAAGATAAGGGAGGTATTCAAAGTCATTTATTTCATATACATGGAGATTTAATACATTTTGGTCAATTTAAAATTGATGACACATTTTGTGACACTTTAAGGCTAAATGATTCAAATGATATGCTTATGAAAAATGTAAATAATTCAAATAATACTACACCAATATTATTAAGTGACTCAAATAACACAACCTTGGAAAGATTGGATAATTTAAATGGTATGACTTTGAGTTCATGCAGTATGTCTTTAAAGACATTAAATGAATCACATAGTCCATCCTCGAAAAGGATGGAACAAAGTACTCCTACAGACCTCATTTCATATGAAGAAAAGTTAGTAGAAGATAGTAGTATTCCTACAAATATCACTGACATAGAGAATATTACTATTTCTAACAGTTTAAAAATGATACATGAATCAAGAAATAAAATTACTGAAATGCCTGTCACTAGTAATTGTGACAAAGCTCCTATGATTAATAATGGAGAACCACTTGATCAGATTTGTCCGAATTTCAGTACAATGATAACTCCATTAGATATGGAAATAAAAATTGAGTTTGAAAATGCTATTATTTCATATGATACACATTACAATCTTGAATCAAAAAGAGCAACTTCTCATTCTTCATTACACTGTGATGATTCATTGCAATTTGAAGAAAATGAAAATTCTGAAGAAGCAAGAAGAAAACAGTTTATTGACATACCTGATAAAAACCAAAGAATACAATTGCAAGACAGTGATTTGAAAAGTAAATTTAAGTGTAAAGAGTGTATGATTCTTTTAGAAAGATGCAATAAAGTGTTGAAATGTTCAAATTTGAGGTTAGGTCAAGATGAAAATACTTCTCAACAAGTAGATTCAAAACAAACAGTACAACAGTTACAGAATGCTCAGGAAATAGGTTTAACAAATAAATTGCCTTTAAGATCTATAGAAATTCCTTTAGTTACATTTGATGAGTTTGAAAAATCTGTTGTTCCTAAATTGATGGCATCTGAACAACAATCAGATGTGTCTGATGATAATGTTGaagttaataaaaaaaaattattgCAGTGTAATGTCTGTAAAAAATCATTTTTTCGAAGAAAGAGCATACGTAAACATATGAAGTTGCTTCATAAGATTTACACATTAAATACATGTAATACACGTTATAAGTTCATGAACAAGTTATTGCAACATTATTTGTCTCAACACACTGTGTTTGGTCGAAAAGAATGTTGTGTATGTTATAAGAAATTCAGTACATTGGGATTATTGAAATGCCACATACTTTTGCATTGTATGAAAATTGTACAGCAAAGGAAAGAATCTGTACCTATTCATGTTAAAACAAAATGCATTATCTGCAGAAAGCAACATAAATGCACAGTTTGTCATAAGAGGTTTTGGTTGAGCACACATTTGAAACGACATCAGAAGGTGTGCCGCGAAGTAAATGCTTTGACATATGAACAGAACATATCTGGCTTAATGTCTTCCTGCATTAATAGACAGCATACATCTCCCACAAAAAGTTCTCCTTTGTCGTCTTTAGAAAAGCTAAGTAATGTCGATTCTAGTATAACAGATATTCAATGTATTTCTTCAACAGTACAATGTACACCGACCAAACAACCTGAACAAATGCCTGATCTGGAACAAAAACCGACGATTGAAGTCATTAATAGAGAATGTACAGAAAATACGACTTCGAATATTTCTAATACAACTGATCTTGTACATTTGTCATCACATGCACTTCCAAATAAAAAAAGACTAATTAACAGAGCTGCATGTGTAAAGGGTTACCAAATTAACATGGAAGATACAACAAAGTTTCCATGTAAGATTTGCTCAAAACAATTTCAAAAGTTTCAGAATTTGTGCATACACGAAAGTATCTTTTGTAAACCAGCCAATAATGTTTGTAACACTTGCAGCACAGCATTTTCTACGAAAAGGCTAATGCAAGTTCATATACTTGCAACACATACACCTTTCTGTGCACAGAAATATAAACTTTTTTGTAAGTTCTGTAATCAAGGTTTCAGTAAAAAAATAAACCTTCAGGTTCATGAACGACATTTTCATTCTAATCATGTTCCGAAACCATGGCTGACTTCGGAGCAACCCTGCAACGTTAACCCCATTTGCAGAGTATGCAATTTAATGTTTCAGTCGAATGCACGCTTCATCGAACATAATATGTATTACTATGAAAATCAAACGTTTGACTGCCGGGCTTGCAAGAAATCGTTCCAAGGGATTTATAAACTTCATCATCACAACAAATTGGAGCATTACCCAGACAATATAAACAAATTATACGTTTACAAATGCAACATTTGTAATGAAGGTTTTAATTATGGATCCCATTTACATGCGCATAAATTGCATGTTCATCCAAACGAGGCGACTTCTACATTGAGTGATTTAAATAAAACGCAATATCCTACTTACACACCAGTACCTAGCAATGTCGTAACGTCGGTGGAATCAGAACAGATATCACTAAAAACATATATTTGCGGTGTGTGCGACTTGAATTTCGCTAATGAGAAAGATCTAGTACTGCATAAGGTAGAATATTCTATGGATGGCAACTTTCAGTGTAATCAGTGCAATCGAAAGTATCGTACTAGTTCAATACTGGCCAAACATTATAGTTTGAATCATACTGACTGCGACATTAACAACAGCTTCAAGTGTCGCTTTTGCGGAGAAGTGCTAACGACTAATATATCGATGCGCTGCCACGAAAAACACTTTCATAGAAAGAATACTGATCTTATAAATAACAACAGTACGACAAATAAAATGGATACGAGTGAAGAATGTAAGGTCAACATGGTTGAACCTAAAAGTGATGGTGACTGTGTGTGTCTGACTTGTGGTATGAAATTTAATGACAAGGACAAACTGAAAAATCATTTATTTGAATATTCGGATATAGGTGAGTACACTTGTACCTTATGTCAAAGAAAATTTACAGAATTGGGGGTATTGGAGACACACAAAATTAAACATACTACGTTGAACACATTTTTATACCGTTGTCCAATATGCAACGAAGGATTTGCAAATTCTACAGACATTCATACACACGTATCGCATTTTCACCGATACGAGACATTTAGTAGTAGTAGTCACGAATTCACTAATATAGTCGATTTATACAAAACTGCTGGCAGTGTGTAG
- Protein Sequence
- MARTLIYTRSVDAIFVGTNLDHNSDPYNVKQGLFNSISENTSANINIKFKNKKQNKAVESEVTIADDSNYKNKKSRSEAPVYLKNNGFNPDAEECIHEHSATCSVCFRHFHSYHALKIHKNKNKSQYKCNRCNATFVVLSSCKRHMKMGCTARITSNPKCGYTCHFCNRFHKDKGGIQSHLFHIHGDLIHFGQFKIDDTFCDTLRLNDSNDMLMKNVNNSNNTTPILLSDSNNTTLERLDNLNGMTLSSCSMSLKTLNESHSPSSKRMEQSTPTDLISYEEKLVEDSSIPTNITDIENITISNSLKMIHESRNKITEMPVTSNCDKAPMINNGEPLDQICPNFSTMITPLDMEIKIEFENAIISYDTHYNLESKRATSHSSLHCDDSLQFEENENSEEARRKQFIDIPDKNQRIQLQDSDLKSKFKCKECMILLERCNKVLKCSNLRLGQDENTSQQVDSKQTVQQLQNAQEIGLTNKLPLRSIEIPLVTFDEFEKSVVPKLMASEQQSDVSDDNVEVNKKKLLQCNVCKKSFFRRKSIRKHMKLLHKIYTLNTCNTRYKFMNKLLQHYLSQHTVFGRKECCVCYKKFSTLGLLKCHILLHCMKIVQQRKESVPIHVKTKCIICRKQHKCTVCHKRFWLSTHLKRHQKVCREVNALTYEQNISGLMSSCINRQHTSPTKSSPLSSLEKLSNVDSSITDIQCISSTVQCTPTKQPEQMPDLEQKPTIEVINRECTENTTSNISNTTDLVHLSSHALPNKKRLINRAACVKGYQINMEDTTKFPCKICSKQFQKFQNLCIHESIFCKPANNVCNTCSTAFSTKRLMQVHILATHTPFCAQKYKLFCKFCNQGFSKKINLQVHERHFHSNHVPKPWLTSEQPCNVNPICRVCNLMFQSNARFIEHNMYYYENQTFDCRACKKSFQGIYKLHHHNKLEHYPDNINKLYVYKCNICNEGFNYGSHLHAHKLHVHPNEATSTLSDLNKTQYPTYTPVPSNVVTSVESEQISLKTYICGVCDLNFANEKDLVLHKVEYSMDGNFQCNQCNRKYRTSSILAKHYSLNHTDCDINNSFKCRFCGEVLTTNISMRCHEKHFHRKNTDLINNNSTTNKMDTSEECKVNMVEPKSDGDCVCLTCGMKFNDKDKLKNHLFEYSDIGEYTCTLCQRKFTELGVLETHKIKHTTLNTFLYRCPICNEGFANSTDIHTHVSHFHRYETFSSSSHEFTNIVDLYKTAGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -