Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000014.1:11611506-11618037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.78 63 4.5 0.3 2 21 73 92 72 93 0.94

2 23 4.6 3.7e+02 2.1 0.9 1 19 98 116 98 119 0.85

3 23 0.0012 0.096 13.4 7.1 1 23 131 154 131 154 0.92

4 23 0.11 9 7.1 6.2 1 23 506 529 506 529 0.96

5 23 6.6 5.4e+02 1.6 0.2 5 23 536 555 535 555 0.93

6 23 0.014 1.1 10.0 3.8 2 23 562 583 561 583 0.97

7 23 0.36 29 5.5 3.9 1 22 610 631 610 631 0.94

8 23 0.00093 0.075 13.7 2.6 1 22 753 774 753 774 0.93

9 23 2.9e-05 0.0024 18.4 0.2 3 23 783 804 781 804 0.93

10 23 0.0086 0.69 10.6 3.5 3 23 816 837 814 837 0.94

11 23 0.93 75 4.2 0.4 2 19 858 875 858 878 0.92

12 23 0.0053 0.43 11.3 2.2 3 23 887 908 885 908 0.93

13 23 0.69 56 4.7 8.2 1 23 919 942 919 942 0.94

14 23 0.0026 0.21 12.3 0.1 1 21 982 1002 982 1003 0.94

15 23 0.094 7.6 7.4 2.0 3 23 1012 1033 1011 1033 0.94

16 23 2.9 2.3e+02 2.7 4.1 1 23 1042 1065 1042 1065 0.84

17 23 0.0021 0.17 12.5 0.1 2 20 1093 1111 1093 1113 0.93

18 23 0.0081 0.66 10.7 5.5 1 23 1120 1142 1120 1142 0.97

19 23 0.0057 0.47 11.2 0.6 1 23 1150 1173 1150 1173 0.93

20 23 0.00039 0.032 14.9 0.8 2 21 1217 1236 1216 1237 0.93

21 23 0.00084 0.068 13.8 0.9 1 23 1244 1266 1244 1266 0.98

22 23 0.03 2.4 8.9 3.3 1 23 1276 1299 1276 1299 0.94

23 23 0.0022 0.18 12.5 3.7 1 23 1364 1387 1364 1387 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.78	63	4.5	0.3	2	21	73	92	72	93	0.94
2	23	4.6	3.7e+02	2.1	0.9	1	19	98	116	98	119	0.85
3	23	0.0012	0.096	13.4	7.1	1	23	131	154	131	154	0.92
4	23	0.11	9	7.1	6.2	1	23	506	529	506	529	0.96
5	23	6.6	5.4e+02	1.6	0.2	5	23	536	555	535	555	0.93
6	23	0.014	1.1	10.0	3.8	2	23	562	583	561	583	0.97
7	23	0.36	29	5.5	3.9	1	22	610	631	610	631	0.94
8	23	0.00093	0.075	13.7	2.6	1	22	753	774	753	774	0.93
9	23	2.9e-05	0.0024	18.4	0.2	3	23	783	804	781	804	0.93
10	23	0.0086	0.69	10.6	3.5	3	23	816	837	814	837	0.94
11	23	0.93	75	4.2	0.4	2	19	858	875	858	878	0.92
12	23	0.0053	0.43	11.3	2.2	3	23	887	908	885	908	0.93
13	23	0.69	56	4.7	8.2	1	23	919	942	919	942	0.94
14	23	0.0026	0.21	12.3	0.1	1	21	982	1002	982	1003	0.94
15	23	0.094	7.6	7.4	2.0	3	23	1012	1033	1011	1033	0.94
16	23	2.9	2.3e+02	2.7	4.1	1	23	1042	1065	1042	1065	0.84
17	23	0.0021	0.17	12.5	0.1	2	20	1093	1111	1093	1113	0.93
18	23	0.0081	0.66	10.7	5.5	1	23	1120	1142	1120	1142	0.97
19	23	0.0057	0.47	11.2	0.6	1	23	1150	1173	1150	1173	0.93
20	23	0.00039	0.032	14.9	0.8	2	21	1217	1236	1216	1237	0.93
21	23	0.00084	0.068	13.8	0.9	1	23	1244	1266	1244	1266	0.98
22	23	0.03	2.4	8.9	3.3	1	23	1276	1299	1276	1299	0.94
23	23	0.0022	0.18	12.5	3.7	1	23	1364	1387	1364	1387	0.93

Sequence Information

Coding Sequence: ATGGCTCGTGTATTAAAGTATGTACGTCTTATCGAGCCAGTTTACGAAAGGGAAAAATTGGATGAAAATCTGAGTCCTTCTAAATGTGGAGTACAAGTGAAGAAGGAGCCCTTAGTCTCCGAAATTAATGTCGAGACTTTTAGTGCAAGTGCAAGAGATCAgggtaataaaaactcgaaacaGAAATCCGCGCAAAAAATGAAAACCGTGAGAAAGACTTGTCCTATTTGTATGGCTGTTCTTAAACACAAGTTTGCATTGGAAAGTCATCTAAAGAAATTTAATGAACAATATGCATGTAAAAAATGCAATGCGATATTCGCTGAATTATATTCATGTAAAAAGCATAGTGAAATATGTGGAACCGACAAAATTTCTCATTCATCTAAGTTTCACTGTAACTTTTGCAACAGATCGTACAAAGACAAGAGTTATCTGCAGCGTCATTTGTTTCACGTACATGGGAACGCAATAAATTCTGGTGGAACGGAACTTAAGAGCACATCTCTTGAGACGTTAGAGAAACCGAACAATTCGAACAGTACACTTACGAATAACTTAGGAACTTCAAACAGTCCTTCTTTCTTGACGAGACGAAGCAGTTTAAATAGTGTGCCTTTGGTGGTATTAAACGATTTATCTAATTCCGTTTCGTTAAACAATTCACCCACCTTATCTGTGAAGATGTTAAACGATTCGTACAGCACGCCTTCGAAGACCAAGGATTTGTATCAACCACCAGCAAAGAAGTTCAAACAGACCACTCTTACAGATTTCGTTGCGTGGCATAAAAGCAAACCGAAAAAGGAATGCGTAACCCCAACGAAAGAAGAGGATGTTTCAGTTTCTCCTAGCTCGAATGTGAGACACAAGTTAACGGAAGAAACTACCGATCCGTCTGCTCCAATTGATCGTACCGTAGCTGCCAGATCTTCTACTAAGCCACCATTTGTTCATATTCACGTGAGCCCTAAGACGATGTTGTCTTTGTTCAACGAGGAAATGCAAGCTCAGCTTGATTATCGTTGTTTAGCCTACAATCTTAGGCCAACGAGATCAATTTCTAGCATTTCACACCATTCTGAGAGCTGGACGTCGTCAGAAAGTCCGATATCATCTAGAACTTGTCAGAATATAAGATATACTCGTAAAAGGAATAGGTTTAGCCGTTTGTTTAACAGCAGTCAAAGGACACAGTTGTCGGACGCAGAGTTAAAAGTGAAATTTAAGTGCAAGGAATGCGTGATCCTTTTGAACAGATGTGACGAAGACGTGAAACGTGCGAAATCTAAGTCGAACGAACCGGAAAATACTGTCGAGCAAGTAAATTCGAAGGGAAGTATTGAAAAATCTGAGAACCTTGGGGAAATGAACTCGGTAGCAAGTAGTCCGTGTTTGAAAACTATAATAGTTCCTTTAGTAAAATTCGTCCATTTGGAGAAGTCCGCTGAATCCGAAATGATCGCGTCTCAGGAGCAAATAGATGGCGAGGGCAACGTCGAACAAACGAAAGTCTTTCGTTGTCATTTTTGCAGAAAGTCATCATCATCGATAAAGAACTTGCACGAACACGTGAAGCAGTCCCATAAGATTTATATATCAACCATATGCAACGCGCGTTACTCGTCCATGAAAAGGCTAGTGAACCATTACCTGTCGCAGCATATCGTGTTTAAACGGAAGAAATGTTGCGTGTGTTACGAGAAATTCCGTACGACAGTGTTGTTGAAGAGGCACCTGATGTTACACTGCGCGAAGATAATACCATCCAAGAATGACACTCTACCAGTCGACGCTGAAATGAACTGTATTACTGCCAAGAAGCCACATAAGTGTAAGGGTTGCTCCAAACGGTTTTGGCTGAATTCGTGTTTGCTACAGCACCAGAAGATGTGTAGTCGAATGAACGCCCACATAAACGAAGAGTCCACAGTTCCTACAAAGAATCTTCTCCGGTCGCCTTCATTGAAGGGGAAAAAATGCATATCTTCAGCGTTGACAGCAGAGGTAACTAGTAGCAACAGTGATTCCAACGTAGGAGATCTTCAACAGCCACCTAGTCTTCCAACACAACGTTCACCAAATAAGCACCCTGTACAGACGTCTGAATCGGAAGCAATTCCGGCCAAAGAAGCTGATACAGAAATTTTAGATAGTTCGTGCGCCTCGAGCACATTAATTGTGAATAATAGGAGGCTCATCAATAGGGTTATGTGCGTAAAGGGCTATCAAGTTAACGACACTAATAAAATGAAATTCCCCTGCACCATTTGCGGGAAACGGTTTCACACGTTTCAAAATCTGTGCATACACGAGAATACTTTTTGCAAACCAGTGACCAGTATCTGCAGCATCTGCGGCACTGCGTTCACCACGAAGAGGCTCCTACAGCTTCACATGCTCGCGACCCACACGCCAcggtccacggagaggtacaagcTGTTTTGCAGGTTCTGTAATCAAGGCTTCAATAAAAACTCGAACCTTCAGGTTCACGAACGTCATTTTCATATTAGACACATTCCTAAAACGTATCTGAATCCGGAGGCGTTCCGCAACCTCAACAATCCAACCTGCGGCACGTGCAACTTGATGTTCCAGTCGTACGAGCACTTCATCGAGCACAACATGTATTATTACAAGGACCAGGTCTTTGGGTGTCCAATTTGCGACAAATCGTTCCGGGGAATGTACATGCTTCACCATCATAACAAGCTGGTGCATTACCCGGAGAAAATAAGGAAATCGTACGTCCACGTATGCAACTTGTGCAATGTCGGCTTCAATTACGAATCGCATCTACACGCGCACAAGTGCCACGTTCACGCGGACGATCCGAGCTCCATGCTAAATGACTTGAGCACACTGCAAGACCACACGTACGCGTTGATGACCAAGAACATCGCAATGATAGAGGAGTTGGTAAAATCGCCGGTTAAAACGTACAGCTGCAGGGTGTGCGATTTGAATTTCACCAATCCGCAAGATTTGGCGACGCACAAAAACGAGTACACCCAGGGCGGTGACCTACTCTGCGATAAGTGCGACAGAAGGTGTTACACCAGTTCAGTGCTTGCTCAACATTACAGTCTGAACCACACTGGTTCCGACATCGGGAACGCGTTCAAATGTCGCTACTGCGGGGAAGTGTTGACCACCGCCATGTCGATGCGGTGCCACGAGAAACATTTTCACGAGAATACTTCCGGTAGCAACATCGATTCGTCGGATTCTGTGGACAACGTCAAACTGGAGCAAGACGACGCCAATAGTAATACGTGTTTGACTTGCGGCACGTCGTTCGACGACAAGGAAACTTTGAAGGAGCACCTGCTGGAATATTCGGACATTGGCGAGCACAGTTGCGTCATGTGCCAAAGAAGATTCACGGAATCGCATCTTCTCGAGCGGCACAAAATGAAACATTCCATGTTCGTTTTGTCCTCGCATCGGTGTCCTATATGCAACGAAGGGTTCGCGGATTCCACGAGCATTAACATGCACGTGTTGCATCTGCACCGGTTCGAGACATCCCCAAACAGCAGCAGCAACGTCGTTAACGTGACCGATTTCCGCGAGGCTGTTAAAAACGTTCGCAGCCCTCCGACTTCGTCTTTCGCTAATTCCGTATTGAAGAAGAAGATGGTCAAGTGCACCGACTGTAAAATAGAGTTCAGCAACAGGAAGAATTTACTGAAACACACGTCACGGTTCAAGAATACCGGGGAGTATAAATGTACGATCTGCGATCGCAGGTTCTCCTGGTTGACGATGCTCGCGCAGCACGAACGCAAGCACTCGGAGGGTGACAACCGCTTGCTCAAACACGAGTGTCCTCATTGCATGGAAAAGTTCAGAAGCTCCGTGTCTCTGTACTCGCATATTATTCACGCTCACGACAAGGACATATTAGCGGTGCGACCAAGTAGCGACGTGAATGGGTCTGAGATTAACGACGTCCAAGGGGGTGATACCAGCAACAAGAGTGCCGCGACCATGGGTGCATCGATAACCACCATCGATGCGAATGAGATGAGCAAACTGGAGGCGGTTAAAGGCGACTTAAATAACGCGGAGAAGTACTTTTCGTATACCTGTCATATATGTGACATGAGATGTTCGACTCTGAGTGAATTTCAGACGCATTCCAAGGCGATCCATAAAAGAGACTTGAAAGCTAGCGAACCAAACTCTGTGCAGTCTGACGTGGTCACTCACTCTGCCGTCTCGAGTACAGCGGTGAACGTTGAAGGGAATCTGGAAAAAGACGATGGGCAGCCCCCTGTAACGCAAGCAACCGACCAGGTTTCGTCTAGCAATCAGATCGAAATTGAAAACACCGATAATTCGTCTAATTCAGTTGGTGACGATGCGATTCAAGTTGTTTGGGACAAAAAATCGAAGGCTGTCGAGTGCGTGACGATCGACGATGAGGAGGATTTGGATGTTCAGATCATCGTTGACGACGGTTCCCTTTCGAATAAACAGGAGGACGTGACGTTGTTGGAGGATATAATTGTCTTAAACAATGTTGGGAAGTTGAGAGTCAAGTCATTCGCGAAAATGGTGGACGGTTGTGAGATAATTAATGCGTAA
Protein Sequence: MARVLKYVRLIEPVYEREKLDENLSPSKCGVQVKKEPLVSEINVETFSASARDQGNKNSKQKSAQKMKTVRKTCPICMAVLKHKFALESHLKKFNEQYACKKCNAIFAELYSCKKHSEICGTDKISHSSKFHCNFCNRSYKDKSYLQRHLFHVHGNAINSGGTELKSTSLETLEKPNNSNSTLTNNLGTSNSPSFLTRRSSLNSVPLVVLNDLSNSVSLNNSPTLSVKMLNDSYSTPSKTKDLYQPPAKKFKQTTLTDFVAWHKSKPKKECVTPTKEEDVSVSPSSNVRHKLTEETTDPSAPIDRTVAARSSTKPPFVHIHVSPKTMLSLFNEEMQAQLDYRCLAYNLRPTRSISSISHHSESWTSSESPISSRTCQNIRYTRKRNRFSRLFNSSQRTQLSDAELKVKFKCKECVILLNRCDEDVKRAKSKSNEPENTVEQVNSKGSIEKSENLGEMNSVASSPCLKTIIVPLVKFVHLEKSAESEMIASQEQIDGEGNVEQTKVFRCHFCRKSSSSIKNLHEHVKQSHKIYISTICNARYSSMKRLVNHYLSQHIVFKRKKCCVCYEKFRTTVLLKRHLMLHCAKIIPSKNDTLPVDAEMNCITAKKPHKCKGCSKRFWLNSCLLQHQKMCSRMNAHINEESTVPTKNLLRSPSLKGKKCISSALTAEVTSSNSDSNVGDLQQPPSLPTQRSPNKHPVQTSESEAIPAKEADTEILDSSCASSTLIVNNRRLINRVMCVKGYQVNDTNKMKFPCTICGKRFHTFQNLCIHENTFCKPVTSICSICGTAFTTKRLLQLHMLATHTPRSTERYKLFCRFCNQGFNKNSNLQVHERHFHIRHIPKTYLNPEAFRNLNNPTCGTCNLMFQSYEHFIEHNMYYYKDQVFGCPICDKSFRGMYMLHHHNKLVHYPEKIRKSYVHVCNLCNVGFNYESHLHAHKCHVHADDPSSMLNDLSTLQDHTYALMTKNIAMIEELVKSPVKTYSCRVCDLNFTNPQDLATHKNEYTQGGDLLCDKCDRRCYTSSVLAQHYSLNHTGSDIGNAFKCRYCGEVLTTAMSMRCHEKHFHENTSGSNIDSSDSVDNVKLEQDDANSNTCLTCGTSFDDKETLKEHLLEYSDIGEHSCVMCQRRFTESHLLERHKMKHSMFVLSSHRCPICNEGFADSTSINMHVLHLHRFETSPNSSSNVVNVTDFREAVKNVRSPPTSSFANSVLKKKMVKCTDCKIEFSNRKNLLKHTSRFKNTGEYKCTICDRRFSWLTMLAQHERKHSEGDNRLLKHECPHCMEKFRSSVSLYSHIIHAHDKDILAVRPSSDVNGSEINDVQGGDTSNKSAATMGASITTIDANEMSKLEAVKGDLNNAEKYFSYTCHICDMRCSTLSEFQTHSKAIHKRDLKASEPNSVQSDVVTHSAVSSTAVNVEGNLEKDDGQPPVTQATDQVSSSNQIEIENTDNSSNSVGDDAIQVVWDKKSKAVECVTIDDEEDLDVQIIVDDGSLSNKQEDVTLLEDIIVLNNVGKLRVKSFAKMVDGCEIINA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -