Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000014.1:17194849-17196837[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.6e-05 0.0021 18.6 0.4 2 23 392 414 391 414 0.96

2 9 1.8e-05 0.0015 19.0 2.6 2 23 419 440 418 440 0.97

3 9 9.5e-05 0.0077 16.8 0.4 2 23 447 469 446 469 0.95

4 9 1.4e-05 0.0012 19.4 1.2 1 23 476 499 476 499 0.97

5 9 5.1 4.2e+02 1.9 0.2 1 12 504 515 504 518 0.82

6 9 2.6e-05 0.0021 18.6 3.8 1 23 535 557 535 557 0.97

7 9 0.0017 0.14 12.8 4.5 1 23 561 584 561 584 0.96

8 9 0.0035 0.28 11.9 1.5 2 23 589 609 589 609 0.92

9 9 1.6e-06 0.00013 22.4 1.0 1 23 615 637 615 637 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.6e-05	0.0021	18.6	0.4	2	23	392	414	391	414	0.96
2	9	1.8e-05	0.0015	19.0	2.6	2	23	419	440	418	440	0.97
3	9	9.5e-05	0.0077	16.8	0.4	2	23	447	469	446	469	0.95
4	9	1.4e-05	0.0012	19.4	1.2	1	23	476	499	476	499	0.97
5	9	5.1	4.2e+02	1.9	0.2	1	12	504	515	504	518	0.82
6	9	2.6e-05	0.0021	18.6	3.8	1	23	535	557	535	557	0.97
7	9	0.0017	0.14	12.8	4.5	1	23	561	584	561	584	0.96
8	9	0.0035	0.28	11.9	1.5	2	23	589	609	589	609	0.92
9	9	1.6e-06	0.00013	22.4	1.0	1	23	615	637	615	637	0.99

Sequence Information

Coding Sequence: ATGTCGACGACCACGGAAGTGTCCAAGGCACAGGACTCGAAGCAACCAGTCGTTAAAGTATGTCGCAGACTCGCTGCAACCGACTCGAAACAGACTAATCAAGTGCCGCACAATTTTAAAGTTATTCCAGCCGCGGGACCGGATGGGAACATTAAGATACGCCCAAAACCGCACAACCCTGTTGGCACGTGTAACAAAGAGGTGGTGTTGATAAAAAACGCGAACAGGTTGACCAGCGTCCCATCAGGATTGATTGGGACGAACGTTGGGATGATTCCTAATCAGACGATGGTCAATAACAGTTTTCAAATAACCAACGTTAACAACAGCTTGACGTTGAGCTACATTAACAGTGGCTTATCAGCGAGCACCGTGAACGGTGGGTTACCATTGAACAATCTCAGGAGCGGTCTACCAGTAAGCAATATTAACAGTGGTTTGTCGTTAAGCAATATTAACAATGGTCTACCATTAAGCAATGTTAACAGCGGTTTACTGTTAGGCAACGTTAGTAGCTCCTCTTGCAATTCACCTTGTAAGATCAAGGAGGATCCAGGCATAGATTCTGTGACACAGCTGTTGATCCCAGTCAGAGATCCGCTGAGTAACGAGATTAAGAACACGTTGGTACCGATGGAGATGGTTGACGTTTCTGGGCAGTACACGGCGAAGAATATTTTGACACCGATCGCTGGGAACGACGGTAACTTAACGTACGACGTGAAGAAAGTCGGGTTGCCTGTGCACTTGGATGCGAACCCATTGGCAAGACTGGAGAACACCGTGGTGTGGAACAATAGCGCGACGACTCAGATAGGTGACAAGCACGTAGTGTCGTACACCTGTGCACAGAAACAGGTACACGAGAAAAAGAAAGAGGACACGCAACTGTTCATAATATTGACTGGTAGTCAAATGAAGCAGCTGGCAAACATTCAGCAGACGGGAAATGATGCTACGGAGATTGGTAATGCGGCACAGGTTGCAACTACGGAGGGACGCGTGGTACCGTTGGAGGAATTAGCGTGGGACAAAAGTCAAGGGATGCAGATAGAAAATAAACCAAAGGTCGACACAGAAGAAAAGGGAACGGAAACGACGGAGCTAGAGATGGAAGAAGAGAAGGAGACGGAAATTCAATGGGCGAATCCACCGCCGCAATACGTGAGAAGCGTCTGCCCAGTTTGCCAGAAGGTCTTCAAGACCCGCAGACTAATGGGAAGACACTTGCGCTCGATACACAAGAAAACTCTGAGCTGCGACAAGTGCAACAAGCGATACTCGACGAGGCAGAGCCTGCTAACTCATcaaaggtctcacgaagacgaTTACTACTTGGAATGCCCCATCTGTCATTTGAGATACAAGCGGGAGGCTGGCTTGAAGAATCATCAGATTCGCGTGCACAGCAACGTGGAGCCAAAGTACATGTGCGACTACTGCGGGAAACGTTACAAACTGAAGTTCGACCTGAGCAAGCACATCGAGAGGATTCATCCGAGTTCGAGCCACATCTGCAAGTCCTGCGGGAAAATCGTGAAGGACATCGGCCACCACGAGTGGGTGCACGAGAGGGCGGCCAAGAAGGCGATCACCCTTcgctatcgttgccacctttgctcCAAGAGGTTCTCGACTCGCAACAACTTGGACAATCACCTGCTGCTGCACAAGGACGGTTTCAAGTGCAATCTCTGCGGAGAAACCTGCAAGTCGCAGACCTCGCTCTCGTACCACAAGGAACGCAAGCACAAACCTACCGCGAGGTGTAGCATTTGCGAGAAGTCGTTCAGCAGGACCAGTTTCTATCAACACGTGCTCACCCACGCTGGAATCAGGCCGTACAAGTGCGACGTCTGCGGGGAGGATTTCACCCAAAGATCGAGCGTTCTGAGACACCGCAAGACTCACCCCGGACCCCTACCGCCTTACACCGAGAGTACACCGATCGCGAACATCGCCAAGCAGATTTTGGAGAAGCTTTCGTGA
Protein Sequence: MSTTTEVSKAQDSKQPVVKVCRRLAATDSKQTNQVPHNFKVIPAAGPDGNIKIRPKPHNPVGTCNKEVVLIKNANRLTSVPSGLIGTNVGMIPNQTMVNNSFQITNVNNSLTLSYINSGLSASTVNGGLPLNNLRSGLPVSNINSGLSLSNINNGLPLSNVNSGLLLGNVSSSSCNSPCKIKEDPGIDSVTQLLIPVRDPLSNEIKNTLVPMEMVDVSGQYTAKNILTPIAGNDGNLTYDVKKVGLPVHLDANPLARLENTVVWNNSATTQIGDKHVVSYTCAQKQVHEKKKEDTQLFIILTGSQMKQLANIQQTGNDATEIGNAAQVATTEGRVVPLEELAWDKSQGMQIENKPKVDTEEKGTETTELEMEEEKETEIQWANPPPQYVRSVCPVCQKVFKTRRLMGRHLRSIHKKTLSCDKCNKRYSTRQSLLTHQRSHEDDYYLECPICHLRYKREAGLKNHQIRVHSNVEPKYMCDYCGKRYKLKFDLSKHIERIHPSSSHICKSCGKIVKDIGHHEWVHERAAKKAITLRYRCHLCSKRFSTRNNLDNHLLLHKDGFKCNLCGETCKSQTSLSYHKERKHKPTARCSICEKSFSRTSFYQHVLTHAGIRPYKCDVCGEDFTQRSSVLRHRKTHPGPLPPYTESTPIANIAKQILEKLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -