Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000008.1:24341229-24350968[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0004 0.032 14.9 0.7 2 19 448 465 447 469 0.89

2 17 3.7e-05 0.003 18.1 4.2 1 23 475 497 475 497 0.98

3 17 0.00035 0.029 15.0 0.1 3 23 505 526 503 526 0.94

4 17 0.45 36 5.3 1.8 1 23 533 556 533 556 0.98

5 17 9.7e-05 0.0078 16.8 0.8 1 23 560 582 560 582 0.97

6 17 0.0025 0.2 12.4 0.5 1 23 588 610 588 610 0.98

7 17 0.00019 0.015 15.8 2.3 1 23 616 638 616 638 0.96

8 17 0.003 0.24 12.1 0.1 1 17 643 659 643 660 0.90

9 17 0.53 43 5.0 2.4 1 23 1226 1249 1226 1249 0.98

10 17 0.00018 0.014 15.9 0.4 1 23 1255 1277 1255 1277 0.97

11 17 2.6 2.1e+02 2.9 0.4 1 19 1283 1301 1283 1305 0.77

12 17 1.4e-05 0.0011 19.4 0.6 3 23 1313 1333 1311 1333 0.96

13 17 0.33 27 5.6 0.4 2 23 1340 1362 1339 1362 0.95

14 17 6.7e-05 0.0054 17.3 2.8 1 23 1366 1388 1366 1388 0.98

15 17 0.021 1.7 9.4 0.6 1 23 1393 1415 1393 1415 0.98

16 17 2e-07 1.6e-05 25.2 0.2 1 23 1421 1443 1421 1443 0.98

17 17 8.5e-05 0.0069 16.9 1.8 1 21 1448 1468 1448 1469 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0004	0.032	14.9	0.7	2	19	448	465	447	469	0.89
2	17	3.7e-05	0.003	18.1	4.2	1	23	475	497	475	497	0.98
3	17	0.00035	0.029	15.0	0.1	3	23	505	526	503	526	0.94
4	17	0.45	36	5.3	1.8	1	23	533	556	533	556	0.98
5	17	9.7e-05	0.0078	16.8	0.8	1	23	560	582	560	582	0.97
6	17	0.0025	0.2	12.4	0.5	1	23	588	610	588	610	0.98
7	17	0.00019	0.015	15.8	2.3	1	23	616	638	616	638	0.96
8	17	0.003	0.24	12.1	0.1	1	17	643	659	643	660	0.90
9	17	0.53	43	5.0	2.4	1	23	1226	1249	1226	1249	0.98
10	17	0.00018	0.014	15.9	0.4	1	23	1255	1277	1255	1277	0.97
11	17	2.6	2.1e+02	2.9	0.4	1	19	1283	1301	1283	1305	0.77
12	17	1.4e-05	0.0011	19.4	0.6	3	23	1313	1333	1311	1333	0.96
13	17	0.33	27	5.6	0.4	2	23	1340	1362	1339	1362	0.95
14	17	6.7e-05	0.0054	17.3	2.8	1	23	1366	1388	1366	1388	0.98
15	17	0.021	1.7	9.4	0.6	1	23	1393	1415	1393	1415	0.98
16	17	2e-07	1.6e-05	25.2	0.2	1	23	1421	1443	1421	1443	0.98
17	17	8.5e-05	0.0069	16.9	1.8	1	21	1448	1468	1448	1469	0.94

Sequence Information

Coding Sequence: ATGGAGATAGGGGAGGGAGAGGCGCAGATTTGTCGACTATGCGGCCAGTATGAGAGTATATACATAGATGTGTTCGGCGAGGAGGGTACCAAACGATTTTTGGGCTTAAAGATTCACACGAAAATCAACATTTTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGACACGACACCAAGTACATCCACAACAAACAATAACAACAATGACATCAACAAAAATCTTAATTCTCCTAGTGATGAGAGAAcgaagaatgttttaaaaacaGCTACAAAGACTCAAAGAAACTTAAGGAGTCAACATCAAGGGAAGGGAAATGAAGAAGCTGCAAAAGATCAGAGTAATGTTCAAAGTACAAGCGAAGAAAACACGGAAAATGTAGATACTATTCAAAATTCTGAAACAACTCCCACAAGATGGCTTAGAAGTAGACAAAGTACAGAGGTAACTGCTACAAATGAAACAACAAGTGATCCGCCAATCGCAAATAGACTTAGAAGTCATGACAATACTGCCACAGAGATAATTGTTAGTCCCCGTAGTAACCCCAGTGAAAATGGTGAAAAACCATCTGGAAAACAGCAAGATCCGCACACTATTCAAATTCCAACGTCTGCATTGAACAAACTTCTCAGTATTGTGTCTAACTCTCCGAATATTGAAGTTTCTGTTAAAGAATCACGAAATCAAAATGACATTGAAGACATCAGTTTCACTGTAGAATTATGTAAAAAGGAAAGTGATGATGTAGCCACTGCTCGAGCGCGGGTGTTTCCTGATCAGGGCTCCTGTTTAGTGGATAAGGCTATTGTTGGCCTTCTACAAAATCAAAGTTGCGTAGAAGTGAACAGTATAATAAACACTATTATCAACAGTAGTCTTAAGAACGGTAATTCAACCAAGTTAAAGGATTCCGCTGAGTTCGAGCAAAAATGGCAAGCATCTCAAAATCCGGAAGAACTGTTCAAGATTGACGGAGAAGAAATTCGTGTTGACGACAACGTTGAGCACGTCGTCACGGATAATCAAAATGGTTACTCTTGTAAACTATGTTGCAAATTCTACGAGCGCAAGGACAAGTGTATGGTTCACGTGAAAACACATTTAGGCATCAAACAATATACTTGCATTCTATGTAACGCCAAATTTGTGTGTAAGTCTGACGTGATGAAACATATTCGATGCTCGCATACCAATCCTAGGCCAATACAATGCCCGAAATGTCCAAAGCGGTTCAAGTCAAAGTTTTACTTAATGGAACACGATAATGTGCACAAAGGTGTGAGACCTTATTCTTGTACAGATTGTGGTCAGAGTTATCATCACAAAGTATCGTTGCAAATTCATATGAAATCGCATTTGCCGCCACAGAACTTGGCTTGCGAATATTGTGGAAAAGTATTTCCATATCGTACGAGATTGTTGAGTCACATAGCTAGCGTACATTTGAAAAATCGTCGCAACTTTAGGTGTCGATTCTGCTATAATCTTTACTCGAGCCTATCGGTCTTGAACGAGCATATCAAAACTCGTCATGCGACTACGTACACATGCGAGGTTTGCACCAAAACTTTCAAAGTCGCGTCTAAATATAAGGCCCATGTGCTACAGCACTCGAATCCCAAGCCATTTGTGTGCAACGTGTGTAACAATAGATACGCATCCAAAGCATTCCTGAACGAGCATCTGTTGAAGCACGAAGGGCTAAGAAAACATATTTGCCAAAAGTGTGGTGCAAGGTTCGCTCAAGCTAGTCATCTGGCTGCACACCGGCACGTACATGGCGAAAAGAAGCATGCCTGTCCGGAGTGCGGACGGAAGTTCAATAGGCGCGATAATATGAAGATAAAAGAGAACGATGGACTGTCGCAGGTTGTTTGCATGCGATGCTTAGGCACACTGGAATTCTTGTGTGACTTTTACGACCGCTGTCATCTTACTCAAAAGGAACTCTTGGAAGCTAGTCAAAATGGGACGATGGCGAAAAGTCAGGAAGAGAATGAAGCGGAATCGGATAAGGAAAACGCTGCTCCACCGGTGAACGAGGTGAAACGGAAGGCGAAACGTTTATCACCTAGCGGTTCAAAACGTATAAAAAATTGTCTAGTACAAAACAACATATCACATAACGGAAATGAGAGAAAAGAAGAAATGAATTGCACCGATAAGAATGAGTACGCTAATGATATTCGGCCAGGCGTACAAACGGCAGTACAATTAAACAATGTAATTTCACGTGAAGACGTACTGGTAAATAATCAAAATGATATTAACTGTTTAAATTTTGAAAGAAATTTGATGACAGTAAAAGAAGATATTGTGACAAATACTATAGTTCGTGTAACAAAACCAATGAATGACTTGGACTCGTCACAAAATAACGAAAGGAATGTCGATATCAGTTCAGGACTGACAATACGTCGCAAGAGAGGTCGGAAAggcaaattgaataaaacaagaAAAACCACTCTTGCAACAAACTTGAAGAAGAATAGCGACTTAGGTGATAGTGTCGATAGTGATTTTAAAAATGAGTTTAAGCCGCATTACCAGCGTACAATTTATAGAAACGGCAAATCTAATAGCGTGATAAATAATGCTGTGATCTCATCTAAACCGAAAATTGAGCAAATGATAgcgacagagcaggtagcagtcGTAGACACAACGTCGAGTGGTGTTTATGCCAAAGACAACGAAATTGATATCATGTACAATGATTTTGCAATAGGTGATAAATCAGCAGAAATAGCATCGGATTATAAAGACGCCGAAAAGCGTGACAACTGTTTAAGAAACACGGAAGACAGATTTGCAAAAAGTAAAGCGATATCGGTTATCGTAAAGCAAGAGAGAGGAGAGACAGAGAGTGCTCCTCTTGGGCAAAATGATAAATCCAATCAGCTCGATTTGATTTCTAGTGGGATGCTGACGCAGACGGTTGAGAATTTCGTGAACAGTCAAAATCAATTGGACCAAGAAAATGTAGCTTTAACGCGGTTCACTCCTCTACTACTAGAGGAAACCAGGAACATTGAGAGTAATGAGACTGATTTGATAGTAGGACAAACAATGTTTAAGGATTCTGATAGAGAAACACTCTCTACAAACCTATTTACGGGACAAAATCGCGTAACTGTTATAAAATCGTCCCAGCTTGTCGATGAAAATCCAAAGATAACACAGGAGGGTTCTGAAGAATCATGTATTGCACTAAATGCAGCAGGCCAAAGTGCTAAAtgcgaggtagagggcaacattAGTGAGCCTTCGTTATCTCGAGAATTTACTCGAAATAGTTTTAATCAAAATAAAAGTAAGGATAGATCTTTTGGTAAAATCTCCGAATTAATAAGCGATGAACAAAAACAAACTATTGAAACTTATTACACGGTGAACATGTCGATGGTAAACTCGGAAGAAGTGCAGAAAAACATAACGATAGTTGATAAGAAAAATATACGTTGTAATATTTGTGGTACCCTTTATCTAAGGATGGATAAGTGTCAGGTACACATTTGGGGACATTTACAGATGAAACCATATCAATGCAAAGCTTGTGATTTTTCCACGGTCACCATTAGTAATGTTCGTTGCCACATTCGGAAGAGTCATTTAAAGATTAAACCGTTCGCGTGCCATCTTTGTGAAAAGCGATACGTAACTGCTATTCTATTAGAAGAACATATTAATACTCATACAGGTGCTCGTCCATACAAGTGTAAACTTTGTGACTTTGCAAGCTCCAGTAGACAAATATTAAGTTATCACAATGCAATTCATAAACCACTGAAGGATATTAATTGCAAATTTTGCGGCAAAGAATTTTATTCGAAAAGCAGACTGCGTGCGCACATGATCGTACACAATAAAGATAAAGCTATTATGTGTAAATTGTGTTCTGCTTATTTGTCTAATGAAGAAGCATTAGAAACTCATCACAGAAACATTCACATGCAAGATTATGTATGTAACATATGTGGCAAACACGTAAAATCAAGGAAAGCTCTGCACAATCATCAGAATGTTCACGCTGTTGCAAAATATAAATGTAATTTATGTCCAAACGTATACAAAAGTAGCCAAATACTGAAAGAGCATCTTTTAAAACATGAGGGTATCAGAAAATACAAGTGCAATGTCTGTGAAAAAGCATTTGCTCAACAATCTCATTTGGCTGCTCATATGGCAGTACATAGCAAAATTAGATTTCATTGTCCTGGATGCGATAAAGCTTTTAATCGACATGACAATATGAAAATACATACAAAACGATGCAAACCGTTTTTGGCAAATCCGGATCTAAAAAATCTTTTAAGTAAAAAAGAAAGGACTATATCATTTAATAATATAGCAGAATTAACTGCTGAACTGAAGCATGAAAATGTATCAAATTCCATATCACCGGTTTCttttaaaaatgaaaataatgACGTATTAGTAAAGACTATAGAAGATCCACAAGAGACTGCAATAAATCTTTGTAAATTAGGGTTGAATATTTCTTGTATAGATCCGTCTGATAAAATATGGAATGATAATAATATGTATAATGAAAAAGAAGCAGTGAGATCAACTGAAATTAAGATTACAAATTTTAATGACAAATTGCTACCAAAAAATGAAAATCTGTCAGTTCTTGAAAACATTTTAAGGCCTGAAAGCTATTGA
Protein Sequence: MEIGEGEAQICRLCGQYESIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTTNNNNNDINKNLNSPSDERTKNVLKTATKTQRNLRSQHQGKGNEEAAKDQSNVQSTSEENTENVDTIQNSETTPTRWLRSRQSTEVTATNETTSDPPIANRLRSHDNTATEIIVSPRSNPSENGEKPSGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQNDIEDISFTVELCKKESDDVATARARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGNSTKLKDSAEFEQKWQASQNPEELFKIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCTKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKIKENDGLSQVVCMRCLGTLEFLCDFYDRCHLTQKELLEASQNGTMAKSQEENEAESDKENAAPPVNEVKRKAKRLSPSGSKRIKNCLVQNNISHNGNERKEEMNCTDKNEYANDIRPGVQTAVQLNNVISREDVLVNNQNDINCLNFERNLMTVKEDIVTNTIVRVTKPMNDLDSSQNNERNVDISSGLTIRRKRGRKGKLNKTRKTTLATNLKKNSDLGDSVDSDFKNEFKPHYQRTIYRNGKSNSVINNAVISSKPKIEQMIATEQVAVVDTTSSGVYAKDNEIDIMYNDFAIGDKSAEIASDYKDAEKRDNCLRNTEDRFAKSKAISVIVKQERGETESAPLGQNDKSNQLDLISSGMLTQTVENFVNSQNQLDQENVALTRFTPLLLEETRNIESNETDLIVGQTMFKDSDRETLSTNLFTGQNRVTVIKSSQLVDENPKITQEGSEESCIALNAAGQSAKCEVEGNISEPSLSREFTRNSFNQNKSKDRSFGKISELISDEQKQTIETYYTVNMSMVNSEEVQKNITIVDKKNIRCNICGTLYLRMDKCQVHIWGHLQMKPYQCKACDFSTVTISNVRCHIRKSHLKIKPFACHLCEKRYVTAILLEEHINTHTGARPYKCKLCDFASSSRQILSYHNAIHKPLKDINCKFCGKEFYSKSRLRAHMIVHNKDKAIMCKLCSAYLSNEEALETHHRNIHMQDYVCNICGKHVKSRKALHNHQNVHAVAKYKCNLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKAFAQQSHLAAHMAVHSKIRFHCPGCDKAFNRHDNMKIHTKRCKPFLANPDLKNLLSKKERTISFNNIAELTAELKHENVSNSISPVSFKNENNDVLVKTIEDPQETAINLCKLGLNISCIDPSDKIWNDNNMYNEKEAVRSTEIKITNFNDKLLPKNENLSVLENILRPESY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -