Xvio011297.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- -
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000015.1:21586793-21589137[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00018 0.015 15.9 4.7 1 23 288 310 288 310 0.97 2 12 0.00037 0.03 14.9 3.6 1 23 314 336 314 336 0.98 3 12 0.00054 0.044 14.4 3.1 3 23 343 363 341 363 0.96 4 12 0.00027 0.022 15.4 3.5 1 23 415 437 415 437 0.98 5 12 0.00085 0.068 13.8 1.4 1 23 442 464 442 464 0.97 6 12 0.00031 0.025 15.2 2.3 1 23 513 535 513 535 0.98 7 12 2.2e-05 0.0018 18.8 0.4 2 23 543 564 542 564 0.97 8 12 1.1e-06 8.5e-05 23.0 2.1 1 23 574 596 574 596 0.96 9 12 0.00024 0.019 15.5 1.6 1 23 602 624 602 624 0.97 10 12 0.00017 0.014 16.0 0.7 1 23 630 652 630 652 0.98 11 12 5.1e-06 0.00041 20.8 2.0 1 23 658 680 658 680 0.96 12 12 9e-05 0.0073 16.9 0.3 1 22 686 707 686 707 0.96
Sequence Information
- Coding Sequence
- ATGACGGAATATTTTGATTTACCACTTAACATGGACAGAATATGCAGAATTTGCCTTACGGAGGGTACCAATTTATCACCCATTTTTTGTACGGATCAAGAAGTAAATGACTTCTCTAGTCTTCCGCAAAAGATACAAGTTTGTGGATCGATAGAAATTCACGAACAAGATGGATTACCTTCGTTAATTTGTGATATCTGTATTTATAAAGCTAGCGTCGCTCATGAATTTAGACAACAGTGTCAACATTCTGATGCCAAGTTAAGAATGTATTATAATAAGCCGCATAAAATTACTATTGTGgaCACATATACGCAAACAGAATCAAAGATACCAAAAGAACATGTCGATCAACAAGATTATTTCGTAAAAGAAGAGATGCAAGTGGCATCAAATTCTCAAGAATACATTCATAGTAACGATTCGTACTGTAGGGATGAATCTAGCTTGAGCACAGGTCAAATTGATATGCAGAATGAGAAACTTTTTATTTGTTCTATTGGATTTGATGGGTCTAAAGAAATTGAAAAGGACCCTTGCACCTCGGAAAATAGTGTAAATGAAACGTCGCTTACACAAGAAAGTAATAATGTTATTCCTGGATCTATAGATCTGCAAAATAAGCCAGAAGATAGTCAAGATATCAATCAGAATCCGGAGGAAGACGACAAGAAACAGGATGTGGAATATTTTGATGAAAATATATTGGATGACAGTGTCAAAGAGGGAGAAGGTATTTTACAAAAACGCACTTCTACCAGGAAAGTAAAATCAGTGCCTAATAAAACGTATAGCGAAGATGAAATCGATGACAATTACTACGACTCGAGTAACGATGGTCAAGATTCTGTAGAATCAAAATTTAAATGTAAAGTATGCTCAAAGTGTTACAACACGCAAAGGGGCTTAAAGAAGCATTCCCTTGTTCATGAAAAAAAGCATAAATGTAACATCTGTTcaaaaatgttttacaaactagAGAACATGGAGAATCATAAGAAAATACATGCAGCGAAACCTCTTGCATGTCAATTGTGTCATGCATGTTTTTCTAAACCTCAAAGTCTTGTACGTCACTTGAAGTCTCACACAGAGAAAGTGAACAACATGATCAAGCAAATCAGTACCGATGAACAGAAGGATAATAAAGAACCGAAAAGAGAAATGAAACTTGAGGATGATACGGATGACGAAAGTGGTACTGTGAATGAAGTTTACGATTTTGAGAATGCACCTGAATTGTACAAATGTGAAATTTGTAGTCAATATTGTTCTTCTTTAAAAAATCTGAAAAGACACACCCTTGTACACGGAGATAAAAAGTATTCCTGCACTGTATGTAAAAAGTGGTTCTTCAGGCCCGACACGTTGAAAAAACACGCAGAGAAACATGGTCATGGATTATTAGATAATTTAGTAGATGACAATAAATTTTTTGACTCCGACGATGATTCTTATCCAAATACTACGCAAAACACTCTGCAAGAAAGTGAAAATGTTAAAAAAGAAGATAGCGACGAGGATGGTTCTGGCGAATACAAATGCCAACATTGTGATAAAATCATGGCTACGAAAAAAGGTCTTAGGCGACACGTATCAATGCATAAGCCAAAAGCTGAACCGGTTACTTGCGAGATTTGTGGAAAAGTATGTGCTAGTCAAGCTCGTCTTGTTCTTCATCAAAGGACACATAAACCAAAAGAAAAGGTTCCACGAGAATATCTGTGTCACATTTGTAGTAAAGTGTATCCAAGTAATTCTTCTCTAACGTATCATATGAGAACTCATACTGGCATTAAACCACATGTGTGTAAAACTTGTAATAGTGGATTTACTACGACGACCAGTTTAGCTAATCACATTCGGATTCATACGGGTGACAAACCGTTTGTTTGTCACGTATGCAGCGCAGCATTTGCTGTGAGTTCAGCATTTAGGCGACATTTGACTCGACATACTGGTGAAGCAAACTATTTGTGCAAAACATGCGGCAAAGCATTCAAAAGGCTAAGTACTTTAAAAGAACATACTTATACCCATTCTGGTGAAAAACCATATGTGTGTAAAACATGTGGTGCTGCTTATAGTCATAGCGGTAGTCTATTCGCACATCAGAAACGTTGTCGAGCACAATACGGGGACACGGTTGTAGATGAGCATCATCACACGGTTGCTCATCATATCCATGTAAATAATATGCAGTCTGCAGTACGATCACTTGCTGTGATAGgacaaatgttttaa
- Protein Sequence
- MTEYFDLPLNMDRICRICLTEGTNLSPIFCTDQEVNDFSSLPQKIQVCGSIEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPHKITIVDTYTQTESKIPKEHVDQQDYFVKEEMQVASNSQEYIHSNDSYCRDESSLSTGQIDMQNEKLFICSIGFDGSKEIEKDPCTSENSVNETSLTQESNNVIPGSIDLQNKPEDSQDINQNPEEDDKKQDVEYFDENILDDSVKEGEGILQKRTSTRKVKSVPNKTYSEDEIDDNYYDSSNDGQDSVESKFKCKVCSKCYNTQRGLKKHSLVHEKKHKCNICSKMFYKLENMENHKKIHAAKPLACQLCHACFSKPQSLVRHLKSHTEKVNNMIKQISTDEQKDNKEPKREMKLEDDTDDESGTVNEVYDFENAPELYKCEICSQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKFFDSDDDSYPNTTQNTLQESENVKKEDSDEDGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVTCEICGKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGDTVVDEHHHTVAHHIHVNNMQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962662;
- 90% Identity
- iTF_00223348;
- 80% Identity
- -