Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000014.1:17165047-17168022[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.11 8.5 7.2 7.6 1 23 25 48 25 48 0.96

2 19 3.7e-06 0.0003 21.2 0.3 1 23 54 76 54 76 0.97

3 19 4.2e-05 0.0034 17.9 1.7 1 23 82 104 82 104 0.97

4 19 0.0034 0.27 11.9 0.8 1 23 110 132 110 132 0.98

5 19 3.4e-06 0.00027 21.4 4.3 1 23 138 161 138 161 0.98

6 19 0.00077 0.062 13.9 2.7 3 23 179 200 177 200 0.94

7 19 0.011 0.91 10.3 0.6 3 23 210 230 208 230 0.95

8 19 1.5e-06 0.00012 22.4 0.7 2 23 237 258 236 258 0.97

9 19 0.00025 0.02 15.5 1.5 3 20 266 283 264 285 0.94

10 19 0.12 9.9 7.0 1.1 2 23 320 342 319 342 0.96

11 19 1.3e-05 0.001 19.6 0.9 1 23 348 371 348 371 0.97

12 19 2.7 2.2e+02 2.8 0.3 2 23 377 398 376 399 0.92

13 19 1.2e-05 0.00097 19.6 0.5 1 23 404 426 404 426 0.98

14 19 0.0092 0.74 10.6 0.5 2 23 433 455 432 455 0.94

15 19 7.1e-05 0.0057 17.2 2.1 1 23 476 499 476 499 0.93

16 19 0.0023 0.19 12.4 0.1 1 23 510 532 510 532 0.95

17 19 0.0089 0.72 10.6 3.6 1 23 538 560 538 560 0.94

18 19 5.5e-07 4.4e-05 23.8 1.1 1 23 566 588 566 588 0.98

19 19 1.9e-05 0.0015 19.0 0.1 1 21 594 614 594 615 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.11	8.5	7.2	7.6	1	23	25	48	25	48	0.96
2	19	3.7e-06	0.0003	21.2	0.3	1	23	54	76	54	76	0.97
3	19	4.2e-05	0.0034	17.9	1.7	1	23	82	104	82	104	0.97
4	19	0.0034	0.27	11.9	0.8	1	23	110	132	110	132	0.98
5	19	3.4e-06	0.00027	21.4	4.3	1	23	138	161	138	161	0.98
6	19	0.00077	0.062	13.9	2.7	3	23	179	200	177	200	0.94
7	19	0.011	0.91	10.3	0.6	3	23	210	230	208	230	0.95
8	19	1.5e-06	0.00012	22.4	0.7	2	23	237	258	236	258	0.97
9	19	0.00025	0.02	15.5	1.5	3	20	266	283	264	285	0.94
10	19	0.12	9.9	7.0	1.1	2	23	320	342	319	342	0.96
11	19	1.3e-05	0.001	19.6	0.9	1	23	348	371	348	371	0.97
12	19	2.7	2.2e+02	2.8	0.3	2	23	377	398	376	399	0.92
13	19	1.2e-05	0.00097	19.6	0.5	1	23	404	426	404	426	0.98
14	19	0.0092	0.74	10.6	0.5	2	23	433	455	432	455	0.94
15	19	7.1e-05	0.0057	17.2	2.1	1	23	476	499	476	499	0.93
16	19	0.0023	0.19	12.4	0.1	1	23	510	532	510	532	0.95
17	19	0.0089	0.72	10.6	3.6	1	23	538	560	538	560	0.94
18	19	5.5e-07	4.4e-05	23.8	1.1	1	23	566	588	566	588	0.98
19	19	1.9e-05	0.0015	19.0	0.1	1	21	594	614	594	615	0.96

Sequence Information

Coding Sequence: ATGCGTCATCAGATATCggtagTTCATGAACGGCTCTGTTTCAGGCCACGAAGAGCAACTTCGCGAGCGATTCACGAGTGCGTTAAGTGCGGCGCCTGTTTCTGCCACACGAGGAAGCTGGTGGAGCACCTGAAGAATCTCCACGGGATCGACAGGGCCTTCAGCTGCGACGAGTGCGGCAAAACGTTCAGGAGCCCCATGAACATAGCGCGGCACAAATTAATTCACACCGGTTCGAAGCGGTTCGCTTGCGACCTGTGCAACTACAGATCGAACCAGAAATCGAACCTGGAGAGTCACCGTCGACGCCACACCAAAGACTACTCGTTCAGGTGCGAACAATGTCAAAAAGGCTTCTATCTGAGAACGGAGTACTTGGAGCACGTGAACGTTCACACACGGAAGCAGGTGTATCGATGCGACCACTGCAGCAAATCCTACCCTTACAAGAAGAACCTGACCAATCACGTGAGGACGCAACACGCGGGTACTCTTCCCGTGGAGTCGAGGAACGACGCGAAAAAGAGGCACCTCTGCACGATCTGCCTCGAAGGTTTCACGCGCAAGTCGTTCCTGGAGAAGCATCTGAAGCAACGCCACGGACTGTACGAGAAAACGAGGCATCTGTGCGATCTGTGCGGCGCGGTGCTCTCCTCGAAGAGGAGGCTGATGGTGCACAGACGAGGCCACGTCAACGAGAAAATCGTTAGGTGCGACTTGTGCGACAAACAGTTCTCCAGCAAGGAGAACCTGAGCATTCACCGAAGGGTGCACACTGGGGAGAGACCGTACGGTTGCTCGCACTGCGGCAGGAGGTTCACGCAGAGGACCTCTTTGATCTTGCATCTGAGCCACTGGAGCGACGTTCACGACGAGCTTAACGGCTGCGAAGATTTCAGCATCAAGAACGAGGATATTCTTCTCGATCCTGGACAGAAATACGAAGGAAACGAGAAGACGTGCGACCTTTGCCAGGAGAAGTTTCACTTCGTAACCAGACTAGTGGCGCACTTGAGGATCGTGCACGGCATCCACAGGCCTTTCAAGTGTGTCACCTGTGGGAAGACGTATCCCCAGCAGTTCATGCTGAACGCCCACGTGAAGAAATCGCACACACCCAAAACGATCCCCTGCGCGCAGTGCAGTTTCATGGGGGTGAGTGCCAGCGACGTGGACAGGCACTCGAAACGACATCACAGAGAAGTGAAGTTCACTTGCGAAATCTGCAGCGAGAGCTTCGAGGACAAGGACTCCCTGATGACCCACACGACCATGCATAATTTCATGCAGTACCAACAGTGCAACGCCTGTGGTAGCACGTTCAACGATGTGTACAGTTTGAAGGAGCACAATCGCCTCTACCACTACGAGCAGACGAGCCTGGCCGGGGACAAGCTCGAGGAGGCCGACCCGCAGAGCATCGAGCACAAATGCGACGTCTGCGGCAAGGTGTACAAGTACAAGTCGGTCCTGAAGCAGCACAAGGTGAAGGCACACGGCGACGTGCCGAATTACGAGAGGCGTCGATACTTGTGCGCCCTGTGCGGCAAGGAGCTGAAGACGGCCAAGGGCCTCGAGATCCACAATCGCTCGCACACTGGCGAGAAACCGTACACCTGCGAGGTGTGCGGCAAGTGTTTCGCTTGCGAGACGCTGCTCAGGACGCACAACGTGACGCACACAGGCGAGAGAAAGTACTCCTGCGACCAGTGCGGGAAGGCGTTCACGCAGAGGTCCACGCTGGTGGTTCACAAGCGTTACCACACGGGTGAACGACCGTACGTTTGTCCACGATGCGGGAAAGGGTTCGTCACCAGGACCGTCTTGAACACGCACATGAAATCCTGTCGCTGA
Protein Sequence: MRHQISVVHERLCFRPRRATSRAIHECVKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCNYRSNQKSNLESHRRRHTKDYSFRCEQCQKGFYLRTEYLEHVNVHTRKQVYRCDHCSKSYPYKKNLTNHVRTQHAGTLPVESRNDAKKRHLCTICLEGFTRKSFLEKHLKQRHGLYEKTRHLCDLCGAVLSSKRRLMVHRRGHVNEKIVRCDLCDKQFSSKENLSIHRRVHTGERPYGCSHCGRRFTQRTSLILHLSHWSDVHDELNGCEDFSIKNEDILLDPGQKYEGNEKTCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCAQCSFMGVSASDVDRHSKRHHREVKFTCEICSESFEDKDSLMTHTTMHNFMQYQQCNACGSTFNDVYSLKEHNRLYHYEQTSLAGDKLEEADPQSIEHKCDVCGKVYKYKSVLKQHKVKAHGDVPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00684909;
80% Identity: -