Xvio002019.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- -
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000004.1:29561214-29563638[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4e-05 0.0033 18.0 4.0 2 23 281 302 280 302 0.97 2 15 0.0001 0.0081 16.7 3.6 1 23 308 331 308 331 0.97 3 15 4.7e-06 0.00038 20.9 1.4 2 23 411 432 410 432 0.97 4 15 6e-06 0.00049 20.6 1.8 1 23 438 460 438 460 0.97 5 15 0.00043 0.035 14.7 0.3 1 23 466 488 466 488 0.97 6 15 2.8e-07 2.2e-05 24.8 0.9 1 23 503 525 503 525 0.98 7 15 3.8e-05 0.0031 18.1 0.5 1 23 531 553 531 553 0.94 8 15 5.4e-06 0.00044 20.7 2.2 1 23 559 581 559 581 0.98 9 15 0.0008 0.065 13.9 0.2 1 23 587 609 587 609 0.99 10 15 3.5e-06 0.00029 21.3 0.3 1 23 615 638 615 638 0.94 11 15 1.8e-05 0.0015 19.1 1.3 1 23 644 666 644 666 0.98 12 15 0.00039 0.032 14.9 4.7 1 23 672 694 672 694 0.98 13 15 5.9e-06 0.00048 20.6 0.2 1 23 700 723 700 723 0.96 14 15 3.9e-06 0.00032 21.2 0.6 1 23 729 751 729 751 0.96 15 15 3.5e-06 0.00028 21.3 4.5 1 23 757 779 757 779 0.99
Sequence Information
- Coding Sequence
- ATGAATTCATTTTGCAATACCACAGACACAAAATTACATCACAGAGGACAAATTGATGTAATAGATATGCCGATACAATTAACTTGTAATTACAAGTACTTCCTTGTTTATGAGGATCAAGTATCCAGATTTGTTGTATTAAAAGGTTTACACGGGAATTCAGCTAATGAAGTAGCTGTAAAACTATTAGACATATTAGCTATTATCGGAGCACCACAAGTTTTACAAAGTAGTAATGGACGTAAGTTTGCGGAAGAAGTTGTACAAGAGTTGCGTCTCTTATGGAAAGATTTTATAATACTGCATGGAGAAATTACAGAGAGTAACGAACAGGGCAGAGATTTTAAGACTTTACTAGAATCCTGGGTTCGAGAAAATCCAACAAAAACATGGAACGAAGCTTTGAGACATATACAAATTTTGCAGAATTCAACATTTCGTTgtgaaaatggaaaaattcctTATGATATGCTATTCGGTAGAAACGTACACGAAGAGTTTAAGAAACGTACCGATTCAGTAGACTCAAAAGAGAATATATGGACAGAAGAAGAATGGATTAATCTTGTATCTAACAAAAAAGATGATGTTAAGGCAGAAAGTAGTCAACAGTTTATAGAAGAGATAAATATTGCAGATGTTAAGGATGAACATAGCTTAGATTGTGAGAGTGAGGACTCTTGCAGCGAAAGTAGAGACAATCTTCAGAGGAACACACCTGATTTTAATTTCGTAAATGTAAAAATTGAACCTTTAAACATCCCTACAGAAGATCCAATGTTTGAGGATGAATCGGGAATGAGTGATAAAGCATCAACTATGGAAAATCAAACCAATTTGAAATGTAAAATCTGTCAGAAACAGTACATGAAACTGGGTCATTTAAAAAATCACATGAGAACACACACAAAGGGGAAAAAATTCGAATGTAAACTGTGTAATAAAACGTTTCATGTTCTAAGTTTATATGAGAAACATATGCGGCAATCTCACAGGCAAAGTAAATTATTCGCTGTGACCAGAAGCCGAAGAAGTAAAGAATCACAAGATAAAACAATATTAGACGCGAAATCCAAGTTAAGCTGTTCCTCGGATTTGAATGACGATGAAAGACAATCCAATGAGGCTAATGACTACCCGAAAGTGACAAAGAATTTAAATCTTCTTAAGGAAAGGAGAAAAATTATTGCAGACAATCGTTCAACGAAAATAGACGGAGAATCAACTCTGGAATGTTCCTATTGTAATCAGAAGTTCAACTTCCCAAGTGTATTGAAAAGACATATGCGATCTCACACGAACGAACGGCCCTACATTTGTGAAATTTGTAATAAGAGCTTTAAGCAATTAGGTCACCTTAGTCAACATTCATTAACGCACAAAGATTATCGGTCTTTCCATTGTGCTGTTTGCGGGATAAAATTCGACTCGTTGGGTTCGCTGAAGGTGCACGCTCAATCGCATAAAGAGGATTACATATTGAAAACTAAAGAGGCTTTTCGTTTGTTTGAATGTGATAATTGTAAAAAGGTGTTCACTACTAAGAGCGTTTTGGAACGACATATACTTACTCATTCTCATGAACGCCAATTCCCGTGCATAATATGCGGGAAAAGGTTTAAACAAGCAGGGCACGTGAAGTCCCATATGTTGGTGCACACAGGTGAACGAAAGTTTGAATGCTCGATTTGTAAAAAGAGATTCAGTCTTTCGAATTCCTTGAAAAAACATATGTACGTGCATAACGGAGAGAAACCATATCAGTGCGACGTATGCGGTGCACGATTTCTCGAAAAGAGAAACCTAAATGGACATCTAATGACACACACGAATGAGCGTCCGTTCCGCTGTAAGATTTGCGGGAAGCGATACACTTTGGCAGATACTTTGCGCAGACACATAAGTGCGGCTCACGAAGATGGACGCACGTATCAGTGTGAAATTTGCGCGAAAATGTTCAAGCAACTCGCTCATCTGTCCGTTCACAAAAAAGTGCACAACGATGAACGACCATTCCAATGTCATTTATGCGAGAAGAACTTCAAGCACAAGAACGTGCTTAAATCGCACTTGGCCATTCACGCGAACGTGAGGCCCTTCGAATGCGATGTATGCAAGGCAACGTTTGTAAGAAAGACAAATCTACAGACACATATCGCATCGGCTCATATGAATGAAAGGCCATACGTCTGCACCATTTGTGGGAAACGGTTTAAGCAAATAAGTCACTTAAATGGTCACGTAGTAGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGACGGTGTAATAGACTGGACAATTTGAAGAAACACATGCGTCTACATACAAAAAATAAAGAATAA
- Protein Sequence
- MNSFCNTTDTKLHHRGQIDVIDMPIQLTCNYKYFLVYEDQVSRFVVLKGLHGNSANEVAVKLLDILAIIGAPQVLQSSNGRKFAEEVVQELRLLWKDFIILHGEITESNEQGRDFKTLLESWVRENPTKTWNEALRHIQILQNSTFRCENGKIPYDMLFGRNVHEEFKKRTDSVDSKENIWTEEEWINLVSNKKDDVKAESSQQFIEEINIADVKDEHSLDCESEDSCSESRDNLQRNTPDFNFVNVKIEPLNIPTEDPMFEDESGMSDKASTMENQTNLKCKICQKQYMKLGHLKNHMRTHTKGKKFECKLCNKTFHVLSLYEKHMRQSHRQSKLFAVTRSRRSKESQDKTILDAKSKLSCSSDLNDDERQSNEANDYPKVTKNLNLLKERRKIIADNRSTKIDGESTLECSYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGIKFDSLGSLKVHAQSHKEDYILKTKEAFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCIICGKRFKQAGHVKSHMLVHTGERKFECSICKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684907;
- 90% Identity
- -
- 80% Identity
- -