Xare002936.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000087.1:1246769-1257859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9e-05 0.0046 17.8 0.7 1 23 272 294 272 294 0.99 2 13 0.18 14 6.8 3.9 1 23 302 325 302 325 0.94 3 13 3 2.3e+02 3.0 0.4 1 23 329 352 329 352 0.89 4 13 0.012 0.95 10.5 4.9 1 23 427 449 427 449 0.99 5 13 0.00039 0.03 15.2 3.5 2 23 458 480 457 480 0.96 6 13 0.3 24 6.1 4.4 1 23 484 506 484 506 0.98 7 13 0.0013 0.099 13.6 2.7 1 23 511 534 511 534 0.97 8 13 0.35 27 5.9 2.1 1 23 538 561 538 561 0.85 9 13 0.024 1.8 9.6 0.1 1 20 580 599 580 601 0.94 10 13 2.2 1.7e+02 3.4 0.1 2 23 648 670 647 670 0.89 11 13 2.5e-06 0.00019 22.1 0.9 1 23 679 701 679 701 0.98 12 13 0.0014 0.11 13.5 0.8 3 23 709 729 707 729 0.96 13 13 4.7e-06 0.00037 21.2 2.6 1 23 735 758 735 758 0.98
Sequence Information
- Coding Sequence
- ATGTACAATCTTAAAGCGTGCGTGGTGTGTTTCAGCACTGATGTTAAATTATTTAGTATGAACAGTGGTCACTTACGACAGGAATTCCATTTGATTTCTGGTATTCAAACATGCCATGGAGCTGGAATGCCAGATTATTTATGTTTTCAGTGTATTGCAACAGTAAGAGGCTACAAAAAATTTCGGGACCGATGCCATAAAGCTCATTACGCTTTAAAAGAAATCTTAAAAAGAAAAAATGTGGTTAATAAAACAGTACTCGACAATTTTAACCGCAATCTTGTTGGTGTCAAGCCACCACTATCATATATGAGCTTAGATAGAACTCACTATGAAGAAGTAAAATTTCAGTGGAAGAAACATAATCGCATTGATTTGTACAGTACCTCTAAGCATGTTATACCTATAGCTCACTGTAGCACCCTCACTCCTGATGACACCTTTGAGGAACTTACTAATTTGAACACTGAAGAATTAGAATTCACTGAAAACAATATTAAAACCGATATAGATGAAACATTACACGAAGAAGTGAATATTGAATATGAACCAGCCAATAATGAGTCCAGCTTTAATCATCAAACTACAGCTGACCCTGAAATAGCAACAGAATCTTTGCTAGACAATGAAAACTTTGACAGTGACGTTGATCAGGATCTAGATGAATACTCAAGTCTATCCTGTAAAGTTGAGAATACAGAAAATGGAGCTGATGGGTCTAATATGGATGAGGAATATGCTACAATGATTCCTATATCAGTGAAAGAGGCTAAGGCTGCAATAGAAGTCTACAAAATGTTCTCTCAGGGTAAATACCGTTGTGAAATATGCAATAAGGCTTACAACAATGACAATCGGTTAAAGATACATTTACGCATGCATGATAAGCATGTAAGTGGAACTTACCATTGTGGACTTTGCCAGTTTTACTATAAAACTGAATTTTTATTGAAGACTCATATGACTGAGAAACATCTGTTTAAGTATTTATGTAGGAAATGTCCTGAAGTTAGTTTTGATAGAACCTCAGCCAAACAACACTACATTTGGACCCATTTACAAAAAGGTAGCAAAAAGAATGCTAACTGGTATGAATCAAGACCAAAATGGTTGAACCCCAGAGGTGGCAAGAGAGTGAAAGGGGTGGTCACTTTGAAACCTGTCAAGAAAATGATGAAGTTGCCAGAAGACTTCCTCATGTACTCTCCAATAGGTCATGAAGAGCAGTATACACTGGTACAAGAGAGACAAAAGTCCAGGAATTATCAGGAAGCCAAGTATCAGTGTCATTTGTGTTATAGAGGGTTTAGGGTTATGCTGACTTATAACAAGCATATGAAGAAACATGACCCTGCCCACTCTGGTCAGCTCCAGTGTGATATGTGCAAGCTGCACTTCAAGGATCAGAGGAAGCTGTACAAGCATATGAACATCACTCACCTGTATAAATACTCCTGCCAGTTATGTAACTACGTGTGTTATAATAGGGGTCAAGCTCACATGCACTACAGATGGCATAAGAATGTGACGTACAATTGTCCTCATTGTAAGAAGGAATTTATGAAGGCGTCAACACGACTAACACACATAAGAATAAAGCACCCGTCTATGTATCTGTGCAACTTGTGTGGACACAGCTTTGTGAGCGAGACCGGGTTATATTGTCACAAACAAATAGCACACACTTCAGAGGAGATAGAGCAAAGCAACCAGTTGCAAATGAACACATCAGACCCGCACTACTGCGCAGACTGTAACCTACAGTTCGCGACCGCCGCCGCCTTCAACACGCATCTCGGCAGCTCCTACAAACACGCCACTACTAATGTTTCAACTCGTCCAAGCCGCAAGCGCAAGTCAGAGGACGAGCCGCGCAGTCGCGGGCGGCCCCGGCGCGGCGCCTGCTCGGAGATCGTCAACAACGGCGTCACCACCTCCAGCACGTGCGAAGTGTGCAGTAAATTCCTGGCTAACGACGTACAAGCTCGCAAGCACTACGAGGCGGAGCACCCCGACACGGAGTACCTCAAGCGATACATGTGCGATGTGTGCGGACATACTACTAGGCAATACGCGAACCTTATAGTGCATATGCGGACCCATACAAATGAGAAGCCATACGGCTGTCCGCACTGCGACCGCCGGTTCAACATGCCCAGCAACAGAGACAGACATCTTGTCGTCCACACTGGTGAGAAACGCTACCAATGTCAGCACTGCAACCGTCGCTTCACACAGAGCAGCGCCGTCAAGCTTCACATACAGACTGTACATCTGAAGATACCGTACGCGCCATGGAACAAGAAGAACAGGAAGCGACGCAAGGAACTAGAGGCAGCGGGTATGTCTACGCCGCTGATCCTGCCCGCGACGACGCACAAGCTACCCTACGATGCCCCGGCAGATTATCTGAATGCCTACATTACATATAATGATGACTGA
- Protein Sequence
- MYNLKACVVCFSTDVKLFSMNSGHLRQEFHLISGIQTCHGAGMPDYLCFQCIATVRGYKKFRDRCHKAHYALKEILKRKNVVNKTVLDNFNRNLVGVKPPLSYMSLDRTHYEEVKFQWKKHNRIDLYSTSKHVIPIAHCSTLTPDDTFEELTNLNTEELEFTENNIKTDIDETLHEEVNIEYEPANNESSFNHQTTADPEIATESLLDNENFDSDVDQDLDEYSSLSCKVENTENGADGSNMDEEYATMIPISVKEAKAAIEVYKMFSQGKYRCEICNKAYNNDNRLKIHLRMHDKHVSGTYHCGLCQFYYKTEFLLKTHMTEKHLFKYLCRKCPEVSFDRTSAKQHYIWTHLQKGSKKNANWYESRPKWLNPRGGKRVKGVVTLKPVKKMMKLPEDFLMYSPIGHEEQYTLVQERQKSRNYQEAKYQCHLCYRGFRVMLTYNKHMKKHDPAHSGQLQCDMCKLHFKDQRKLYKHMNITHLYKYSCQLCNYVCYNRGQAHMHYRWHKNVTYNCPHCKKEFMKASTRLTHIRIKHPSMYLCNLCGHSFVSETGLYCHKQIAHTSEEIEQSNQLQMNTSDPHYCADCNLQFATAAAFNTHLGSSYKHATTNVSTRPSRKRKSEDEPRSRGRPRRGACSEIVNNGVTTSSTCEVCSKFLANDVQARKHYEAEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELEAAGMSTPLILPATTHKLPYDAPADYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072296;
- 90% Identity
- -
- 80% Identity
- -