Xare021665.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- zfy1_1
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010001079.1:38154-51729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.059 4.6 8.4 2.1 1 23 103 125 103 125 0.97 2 12 0.2 16 6.7 4.1 1 23 132 154 132 154 0.97 3 12 0.39 30 5.8 1.0 1 15 158 172 158 181 0.82 4 12 1.1e-05 0.00086 20.1 2.8 1 23 186 208 186 209 0.95 5 12 0.0045 0.35 11.9 0.6 2 23 216 237 215 237 0.97 6 12 1.8e-05 0.0014 19.4 2.0 2 23 251 272 251 272 0.98 7 12 0.24 18 6.4 3.6 3 23 278 299 276 299 0.95 8 12 2.6e-05 0.002 18.9 3.0 2 23 310 332 310 332 0.97 9 12 0.0091 0.7 10.9 0.7 1 23 339 362 339 362 0.96 10 12 0.0018 0.14 13.1 0.1 5 23 374 393 372 393 0.92 11 12 0.0002 0.015 16.1 5.0 1 23 402 424 402 424 0.98 12 12 0.00058 0.045 14.7 0.3 1 23 429 452 429 452 0.97
Sequence Information
- Coding Sequence
- ATGGTCATAAAAGCAATATTGAATAAAAAAACTGGAGACCCGATATCAAGACTGCCGCTTAAAAAAAGAATAGAAAAGACCATAAAGAAGAATGAAGATGAAGCGTGCTTCCCAGACAAAGATGATAAGGCAAAAAAGGAGGTCACTGAAGAAAATGACTCGCAGGGTAATAATACAAAATCTAAAGTGGAAACGCCCGTAATGTACGCCTACGAGATAACCAAAAACATAGAAATTGTGACGATTAGTGAAGAGGAGCGTCAGAAGGAACACCTCGAGACGATGAAGTTGCGGCAGCACATGCGGCACGTGTGTTCGCACTGCGCGCTAGGGTTCGTGCTGCAACACGCTTACGATGTGCACATGAAGGTGCATGCTCCCGAATCTGGCGACCACGAGTGCTTACTCTGCCACTCACGGTTAAAGACCGCCGATATGCTATACCGGCATCGCTTACGTCACTACCGCCGGTACCGGTGTTTGTTATGCTGGACACGGTTCAAGGATAAGGATACGGCGGCTTGCCACGTCATGAACGATCATGCGGGACAGGCATTTCGATGCGATCGTTGTGGCAGAGGGTTCAAGCGGCCGCAGTACCTGAAGCGCCACGTAGAGCAACACCACACTAAGCCGATGAGTCTAGAATGTGCTGTATGCCTCCGTGTCTTCCACGAGAGAGGCTGGTATAGGTCTCATATCAGAACACATAACGAGGAAGTTAGAGCTAAGACGGTAAAGTTACCAGCCACGTGCAAGATCTGTTCTCGCGACTATAAAAACAAAGCGACGTTGAGACGTCACCTTATGACGCACGACGAGGATGTCCACTGCGAGATCTGTTACGAGAAGTGTAAGAACAGAATGACTTTGGGGAAACACTACTTGAAGGTACACAATACGAAGTATGCGGGCTCTACGCAGGAAACTTGTCCTGAATGCAAGCGGATTTGTGCGACGAGGTCGATGCTCAAACGGCACATGCAGCGAATGCACAGCGACAGGACTAAGAAATACCAATGCGATTATTGCCAGCGTTTTTACCTAACTAAAGGCGAGGTTCGGTCCCACATAATGTGGTCGCATATGCCGGTGGAAGTGCGCGGCGGACACGCATGCGGCTGCGGTCGCATATTCCGAACCCCCTCGCTACTTAAGGATCATGCAGCGAGGTATCATGCGCCAGAACCACCGCCAAGGGTTCATAGATGTGATCACTGTGAAAAGGCGTTTGCGAACAAGCAAGTTCTGAACCGCCACAAGAAAAGCCATTCCAACGAGATGTACCCTTGCAACGAGTGTGGCTTGCTCTTCAAAACTCAACCATACGTAAAAGTGCATTACCAAATAAAACACCTCAAAATGACGCGAGCACAAATAAAAGCTCAAAGAAAACTCAACAGAAATAAGATAATTCAGAATAATATACATAATAATACTAACTGGGAGCCGCCTATATCTGATAAGAAGGAGGTTATGGACAATGGTGATAATGAAGATCCTCTTTTATTACAAGAAAATGATATACAAATCAAGTTGGAGCCGGTAGATGATATTGAAGTCCCAATGTTCCAAACTTTTGTAGAGAATAAATAA
- Protein Sequence
- MVIKAILNKKTGDPISRLPLKKRIEKTIKKNEDEACFPDKDDKAKKEVTEENDSQGNNTKSKVETPVMYAYEITKNIEIVTISEEERQKEHLETMKLRQHMRHVCSHCALGFVLQHAYDVHMKVHAPESGDHECLLCHSRLKTADMLYRHRLRHYRRYRCLLCWTRFKDKDTAACHVMNDHAGQAFRCDRCGRGFKRPQYLKRHVEQHHTKPMSLECAVCLRVFHERGWYRSHIRTHNEEVRAKTVKLPATCKICSRDYKNKATLRRHLMTHDEDVHCEICYEKCKNRMTLGKHYLKVHNTKYAGSTQETCPECKRICATRSMLKRHMQRMHSDRTKKYQCDYCQRFYLTKGEVRSHIMWSHMPVEVRGGHACGCGRIFRTPSLLKDHAARYHAPEPPPRVHRCDHCEKAFANKQVLNRHKKSHSNEMYPCNECGLLFKTQPYVKVHYQIKHLKMTRAQIKAQRKLNRNKIIQNNIHNNTNWEPPISDKKEVMDNGDNEDPLLLQENDIQIKLEPVDDIEVPMFQTFVENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -