Xare018447.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000758.1:120798-139498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.02 1.6 9.8 0.6 1 23 227 249 227 249 0.98 2 11 0.0011 0.083 13.8 1.3 1 19 256 274 256 276 0.97 3 11 5.7 4.4e+02 2.1 3.3 1 23 282 304 282 304 0.90 4 11 0.0014 0.11 13.4 1.1 1 23 309 332 309 332 0.98 5 11 0.00044 0.035 15.0 0.3 1 23 336 359 336 359 0.95 6 11 0.012 0.92 10.5 1.1 3 21 373 391 372 392 0.93 7 11 0.99 77 4.5 0.2 2 23 438 460 437 460 0.95 8 11 0.0061 0.48 11.4 0.1 2 19 476 493 475 497 0.93 9 11 4e-05 0.0031 18.3 2.9 1 23 503 525 503 525 0.98 10 11 6.5e-07 5e-05 24.0 2.6 1 23 532 554 532 554 0.96 11 11 6.4e-05 0.005 17.7 4.3 1 23 560 583 560 583 0.95
Sequence Information
- Coding Sequence
- ATGGGTGATAAAATTAAAACATTTACAAGAGCCAAAGTATGCAGAATATGCCTATGCAGCGACAGAAAATTGTATAAGATGAGGAAATACAACCTTTTTGTGCATTATGTACAAGTTACAGAAATAAGTGCACATGTTGAAGACCGACTCCCACAGCGCATATGTTGGGAGTGTGCTGTAAGACTGGTTGCCGCAGCCTCCTTCAGAGCCAAGGCTGTGCACAGCGATGCGCTACTCAACAAACTGCTGCGGAGTCGTGTCAATACATTCCCAGATATTTCTACAATAGATCGCGCAGAAAATAAACTAACTTCCTCACTTACTTCAAAAATATTTGAGTCTGACCACACCGATTATCATTTTATATACACAGAACCTAATATACAGGATGTACAAGAAATAAACTTACCTAACATTAATATAGAGTCAGACACACAAATGCACGACTACATCGACTCTAGCGATGACATTCTTCAAAAAAACACTAAGAGAGTGAAGAAAAAGAAGCGAGTCGGAGAAGTCGGGGCAGTCGGCACAGTCAAGAAAGTCGATAAACGTTATAAGCCTGCCAATGAAGTGTTAAGCGATGATATTTTTAATATCACAGACTTGTCTCAGGATCAGCAGATGTATGAGATACAGAAAAGGCAATATTCGCCAAATTATAAAAATTCTGTGTTTAAATGTATGGAGTGTTTCAAAGGGTTTTTGGATGAAGACGCTTATAAAGGACATATGAACAGACATACTGATCAATGTGGTGTCTACCAGTGCCATATATGTAAGATACGGTTCAAGAAGCTTCAAGCTCTACGGAACCACTCTACTTGTCATATGCAGAAGTTTAGCTGTAAGAAATGTACTTACATTACTTTTAGAAGACATGCAGCCAAATTACACGAAGAATATCATAACGGAACTAAATATGTTTGTCCGCATTGCTTGGAAAATTTCGACAAGATATCTACGTACATGAGTCATATTCGTATAAAGCACCCATCAGACTTCGTGTGTGCACTGTGCGGGTATTCCTTCGTCAGTAACAAGGGGCTCGCTCTGCACAAGAAATTAAAACACCGCTTTGATGAACAAATAATACCTGAAGATGGTCCAAATTGTTGCAAATGTGATGTACAATTTGTTAATAAAGAAGCTTTGGAAAGACATAAACAGTTATCGGGAAGACACAGGGATGAGTCAGAACCAAACAAATCTAGGGTCCGTCGTCCACGAGAATTGCAAGAGAGAAACAGTGCGACAACAGACTCGGAAAAGAAAAAACGAACCACATGCAAACCTGAAGGGCCTATATCTTGTGAACAGTGTGAGATGCAGCTACCGGACCCCCTGTCGTACTACAGACATTTCAGAAGAATGCATCCGGACAAGAATCGAACCAAGTACCCCTCAATGAAGTCGAAGAGCATGTGTGAAGTTTGCGGGAAAATGTTTCAGAGCTTAGCCCTTCTCCAAGACCACAGCTGGAGCCACACAGAGTCCAAGCAGTTCAGCTGCACACAGTGCGACAAGCGGTTCCAGCGCAAGTACCGGCTCATCGCGCACCGGCGCCTGCACGCGCGCGCGCCGCGCCGCCACCACTGCCCCCAGTGCGGGAAGGGGTTCACCACCGCTAGTAACATGCAACGGCATATGGTGAGTCACACTGGTTTGAAGCCGTTTAAATGCGAGATGTGTGGGAAATGCTTTAAGCACGCGAGCGAGAAACGAGTCCACATCACTTATGTACATCTCAAGAAACCCTGGCCGAAGCGAGCTAGGGGGAAGAGGAAACCTGATAATAGACAAAATCAGTTACCACCAACGGCTGCAATGGCCCCCGTGTCAGATATCGTGCAACCGTTATGGCCAACATGTACTGACCCTAAAATTAACATAGTGGATGACGAGCCCATGTATTATAACATTAAAATATAA
- Protein Sequence
- MGDKIKTFTRAKVCRICLCSDRKLYKMRKYNLFVHYVQVTEISAHVEDRLPQRICWECAVRLVAAASFRAKAVHSDALLNKLLRSRVNTFPDISTIDRAENKLTSSLTSKIFESDHTDYHFIYTEPNIQDVQEINLPNINIESDTQMHDYIDSSDDILQKNTKRVKKKKRVGEVGAVGTVKKVDKRYKPANEVLSDDIFNITDLSQDQQMYEIQKRQYSPNYKNSVFKCMECFKGFLDEDAYKGHMNRHTDQCGVYQCHICKIRFKKLQALRNHSTCHMQKFSCKKCTYITFRRHAAKLHEEYHNGTKYVCPHCLENFDKISTYMSHIRIKHPSDFVCALCGYSFVSNKGLALHKKLKHRFDEQIIPEDGPNCCKCDVQFVNKEALERHKQLSGRHRDESEPNKSRVRRPRELQERNSATTDSEKKKRTTCKPEGPISCEQCEMQLPDPLSYYRHFRRMHPDKNRTKYPSMKSKSMCEVCGKMFQSLALLQDHSWSHTESKQFSCTQCDKRFQRKYRLIAHRRLHARAPRRHHCPQCGKGFTTASNMQRHMVSHTGLKPFKCEMCGKCFKHASEKRVHITYVHLKKPWPKRARGKRKPDNRQNQLPPTAAMAPVSDIVQPLWPTCTDPKINIVDDEPMYYNIKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -