Xare011048.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000360.1:6396-13006[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.7e-05 0.0013 19.5 0.2 3 23 174 194 172 194 0.96 2 11 0.27 21 6.3 0.2 3 23 200 220 199 220 0.91 3 11 0.71 55 4.9 4.7 2 23 227 249 226 249 0.93 4 11 0.015 1.1 10.2 1.6 3 23 259 280 257 280 0.93 5 11 2e-06 0.00016 22.4 0.3 1 23 285 307 285 307 0.98 6 11 0.00081 0.063 14.2 4.1 1 23 313 336 313 336 0.96 7 11 8.2 6.4e+02 1.6 2.2 2 13 342 353 341 362 0.83 8 11 0.0017 0.13 13.2 0.1 2 23 367 388 366 388 0.97 9 11 0.00011 0.0089 16.9 0.2 1 23 394 416 394 416 0.98 10 11 0.021 1.6 9.8 3.0 3 23 424 444 422 444 0.97 11 11 2.9e-07 2.2e-05 25.1 1.6 1 23 450 472 450 472 0.98
Sequence Information
- Coding Sequence
- ATGGAGATGTGTAGGGTTTGTTTATCAACTGAAAAGCAAATGCTTCCACTGGATGAAACTTTCGTTTACAACTATAACTTATTGACAAATCTTAATATAACATTATTAGATGGAATGCCACAATATTCCTGCCAACTATGTACTGACACGGTCAGATGTTTCATGGAATTCAGGGAAAAGTCAATTACATCTGAAGCTACATTAAGGGAGATTATTTATGCTGATATTAAAGATGAAAATAAAACACATGTTATTGAAATTGATAAGAAACCTTCCAGTTATCAAAATGAAAATTCACTGACTATAAAGTCTGAAATTAAAGAGGAAAATGATGATTCACTTTTGAACAATTTTGATGTTACATTTGATGATTATGCTGATGAGGATAAGTACTTGGTCATCAAAAAAGATAAAGATGATGTGAAATTAAAGATCAAAAGAAAAAGGCACAAGATAAAAATAGCAAAAACATCCAAATTACTAGAAAAATTTACAAATGAAATTGATGACAAATGGTTTTGTGGTTTATGTCCCAAGACATTTGAGGATAAGAATGAGCTAAACAAACATATAGATAGCCATAAAAACGAAAGGGAATGTATTATTTGTCGAGAGAAACTGAACAGCTTGTCCCAACTCCTTGCACATAGACTAATACATGTCCCAATGAAACAAAATAAATGTCATATTTGTGAAAAAAGGTACAGAGCTTGTACATATCTGGAATTTCATTATAGGAATATACACATTGAAGGAGATGACAGAAGGCTGTTTTGTAATGATTGTCCAGTGACATGTGATACCCCAAAAAAACTCAGCAATCACAGACTACAAATGCATTCTAGTATAAAATATATTTGTGACATGTGTTCTAAAGCTTTCATAAGCAGAGCAAATCTAAAATCACATATTAAATTACATAGTGACAATAAGGCCTATGTTTGTGATTTGTGTGGATTTTCCTGTAAACATAGCAGTGGATTAAAAGATCATAAAATAAGAAAACACGTCCCGAAAAGAGTGTACTGTAAAAATTGTAAGCGACCATTCCAAGATCAACTGGAGCATGACAGACATAAATGTAAAATTAAGTTAATTGTGTGCCCCATGTGTGGATTGCAGCTCAATGGAAGTAGTAGATTATCAAAACACATGATGGTTCATAGCGACATTCAAAAGTATGAGTGTACAAGATGTCCAGCTAAGTACAAAACTAGTGGCGCTCTGAAAGCTCATCTAGACCGGCACGACGGCAACCGTACTAAGCACTGTGAATTTTGCCCGGCTAAGTTTTACACTCACGCCGTTTTGATCAAACATCGTCGAATACACACAGGTGAAAAACCATATGTATGCAAGGTTTGTAACAAAGGGTTTACAGGTAACCACAACCTTAAGGTACATATGAAAGTACATGGAGAATATTTGGTTGTTAAAAAGAATACTGACCAAGACGATTTAACTAGTTTTACCAAGTGA
- Protein Sequence
- MEMCRVCLSTEKQMLPLDETFVYNYNLLTNLNITLLDGMPQYSCQLCTDTVRCFMEFREKSITSEATLREIIYADIKDENKTHVIEIDKKPSSYQNENSLTIKSEIKEENDDSLLNNFDVTFDDYADEDKYLVIKKDKDDVKLKIKRKRHKIKIAKTSKLLEKFTNEIDDKWFCGLCPKTFEDKNELNKHIDSHKNERECIICREKLNSLSQLLAHRLIHVPMKQNKCHICEKRYRACTYLEFHYRNIHIEGDDRRLFCNDCPVTCDTPKKLSNHRLQMHSSIKYICDMCSKAFISRANLKSHIKLHSDNKAYVCDLCGFSCKHSSGLKDHKIRKHVPKRVYCKNCKRPFQDQLEHDRHKCKIKLIVCPMCGLQLNGSSRLSKHMMVHSDIQKYECTRCPAKYKTSGALKAHLDRHDGNRTKHCEFCPAKFYTHAVLIKHRRIHTGEKPYVCKVCNKGFTGNHNLKVHMKVHGEYLVVKKNTDQDDLTSFTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -