Xare016957.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000662.1:297919-310243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0055 0.43 11.6 0.6 1 23 264 287 264 287 0.97 2 11 0.0012 0.091 13.7 1.1 3 23 296 316 294 316 0.97 3 11 1.8 1.4e+02 3.7 2.0 1 23 320 342 320 342 0.92 4 11 0.11 8.5 7.5 5.8 1 23 347 370 347 370 0.95 5 11 0.64 50 5.1 0.1 3 23 377 398 377 398 0.97 6 11 0.00079 0.061 14.2 0.2 3 19 407 423 406 426 0.94 7 11 0.0056 0.44 11.6 0.2 1 23 432 455 432 455 0.95 8 11 5.4e-06 0.00042 21.1 2.1 1 23 461 484 461 484 0.97 9 11 0.0019 0.15 13.1 0.6 2 23 500 521 499 521 0.96 10 11 5.4e-07 4.2e-05 24.2 1.1 1 23 527 549 527 549 0.99 11 11 5.7e-05 0.0044 17.8 0.9 1 23 555 577 555 577 0.96
Sequence Information
- Coding Sequence
- ATGTCTTTAGTGACATTAAAAAACGAATTTACTGATAATTTACCAGCTTGCAGAGCCTGTTTGGCTACGAATAGGAAGCTATATAGCATATATAATGAAGAATTTTCAAAAGCTTACAGAAACCTTATAGGAATTGAAACGTCACCATATGACACATTGCCGCAATACTTTTGTATATATTGTTGTACTCATCTATCAAAATACAACAGCTTCAGAGATCTGTGCCATAGAGCAAAAAAATATTTAGAAGATGCAAGACTAAGAAATGAAAATATAACATTAAATTATATAAACAATTTCCCACAAAACACAAAACTGTCAAAAACTATAACAAAAATATTTGACGTCAATGAAAAAGACAGCATATTAGACGAAGATCTCTCAAAAATTTACAGAGATGATGAAAGTAATCACCAATTTGACAATCATGATGAATCTCATCACCAATACACATACTCATCACCAGATTCTCAAATCGACTCAAAAATTTACACCGACATAGTGAAGATAGAGCCACAAGTTTTAGAAATGAAAACGGATTACGAAAAAATTACAAAAAAGGAAAAAAAAGTTTCGGGTTTGAGAAAGAAAAGTAAGAGGGTCTCAGATTTGAGACAGAAAAATAAAAATAATGAGTCTGACGGTAAAAAGCGAAAATATTTTGAGACGACAGAGAATATGCATGATTTTGAGAGAGCTTACAATGTCGATATTATAGTTTTGAGTCAAGAACAACAAATGAGTGACGTTTTAGAAAGAAAATTAAGTTTTAATTATTTACACAGCCCGTATAAATGTGATTTGTGTTACAAAGGATTTATGAGTGAAGATATTTTAAATAAACATTTAATGTCACAACATGATCCCTGTCGCGGTGACGTCATCTGTGAGTTCTGCCAGTTTCGTTACAAAGACAAACGCGGTCTCAACCAACATCTCAAGAGCCACCGACTTAAGTTCGCGTGTAAGCAGTGCTCCTATATATCTAGGACTACCTTTAGCGCAAAGGAGCATTTTAAAATGCATGGTGGACAAATGCATGAATGTCGACATTGTGGGAAATCTTATGAAAAACTGTCAAGCCATCTATCTCACTTACGCATCCAGCATCCGTCCGAGTTCATCTGGTGTGACGTCTGCGGTGACGCGTTTATTGGCACTTTCGGTCTAAACGTGCACAAGAAAAGAGCTCATCGACATCTCTCCCTCCCCTCCGCCTGCCCCTCTTGCGACAAGCACTTCGTCGATAGCACAGCCTTAAACCGTCATTCACTACTCGACCGTTGCAGTGAATACACGTGTGTACATTGTGGTGATGCGTTCGTTCAAGCGCTGGATTTGAGAGATCATCTGTTAGAAAAACATAGGACCTGTAAAGTTTTTAATTGTGAGAAGTGCAATAAGACATTTTCTCGTGAATCTCTATACAGTGCCCATTATAGGCGTATTCACGTGGACTCAGAAGAGAAAGAGACCCGCAAGAAGGAGAGACCGTGGGTATGTGAAGTTTGTGGAAAAACTCTACCGAATAAATGCGTGTTACTCTACCATCAAAGAAATCATACCGGTGAAAAGCCATACCAATGTCCCCAATGTCCTAAGAGATTTACTATGAGAAAACTATTACAATCACATTTAAGAGTACATACCAGCGATCGTCCTTACATCTGCAAGTTATGTCCTAAATCTTTCAAAGGACTATCGGCTTTGAGGTCTCATGAACATATACACACAGGACAGACAAAAGTATAA
- Protein Sequence
- MSLVTLKNEFTDNLPACRACLATNRKLYSIYNEEFSKAYRNLIGIETSPYDTLPQYFCIYCCTHLSKYNSFRDLCHRAKKYLEDARLRNENITLNYINNFPQNTKLSKTITKIFDVNEKDSILDEDLSKIYRDDESNHQFDNHDESHHQYTYSSPDSQIDSKIYTDIVKIEPQVLEMKTDYEKITKKEKKVSGLRKKSKRVSDLRQKNKNNESDGKKRKYFETTENMHDFERAYNVDIIVLSQEQQMSDVLERKLSFNYLHSPYKCDLCYKGFMSEDILNKHLMSQHDPCRGDVICEFCQFRYKDKRGLNQHLKSHRLKFACKQCSYISRTTFSAKEHFKMHGGQMHECRHCGKSYEKLSSHLSHLRIQHPSEFIWCDVCGDAFIGTFGLNVHKKRAHRHLSLPSACPSCDKHFVDSTALNRHSLLDRCSEYTCVHCGDAFVQALDLRDHLLEKHRTCKVFNCEKCNKTFSRESLYSAHYRRIHVDSEEKETRKKERPWVCEVCGKTLPNKCVLLYHQRNHTGEKPYQCPQCPKRFTMRKLLQSHLRVHTSDRPYICKLCPKSFKGLSALRSHEHIHTGQTKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -