Xare014893.2
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000543.1:86874-109325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00037 0.029 15.3 0.2 2 23 144 165 143 165 0.93 2 10 0.00047 0.037 14.9 2.8 1 23 171 193 171 193 0.96 3 10 6.2e-05 0.0048 17.7 0.3 1 23 284 306 284 306 0.98 4 10 0.00056 0.044 14.7 0.0 3 23 384 405 382 405 0.90 5 10 0.0028 0.21 12.5 0.0 1 23 420 442 420 442 0.93 6 10 1.3e-05 0.001 19.8 0.2 1 23 474 496 474 496 0.98 7 10 0.00058 0.045 14.7 0.2 1 23 502 524 502 524 0.97 8 10 0.00032 0.025 15.5 0.3 1 23 530 552 530 553 0.95 9 10 0.015 1.1 10.3 1.8 1 23 566 588 566 588 0.96 10 10 0.035 2.8 9.0 0.0 1 20 723 742 723 745 0.93
Sequence Information
- Coding Sequence
- ATGGATGGGGAAGCTGAAGAGTTCAACCTCCAATGGGAGGAGGAAGTTGAAGTGAAGCACAGTCCAGGTGTAGTTGAAACGGAAGAGGTGATATCAGGCCTAGATAATGTGCAGCATACAGCCTACTCCAACATGACATCAGAAGAAATGATGAGCACGGACCAAATGGCTGCAGAGAACTTGATGTTTTTATCTCAGGATGTAGTGAGTTATACAGAAACAGCTGAACTTGCTGATGATCCCAGTGTGGAGTGTGTCACTGAAGAGGTCATCACGGATGATTGGGTGATTCCTGGTGGACAGGAAAGGTACCAAGTGGAAGTCCCTATGGAACATCTGACACACCCTGAAATGGTTTTAAAAGAAGAAAATGACCTTGATGTACCTTTACCAACAGATCAAGATGAATACACGGCTATGCGTCCGTGGCCGTGCGATTTCTGTTCGCGGCGGTTCCGTAAGAAGGCGGCGCTCATGAACCACATGGTGGCCCATCAGAATGATCGGCCGCACGCCTGCAACCTGTGCGGCTTGCGGTATGTCCGCAAGTGTGATCTTATGAATCACCTCAAAGTTCATGCCTTTGTGCCCGACAACCAGGACTCAATAGATTATGAGGATGTTTTAGACAATAACGAAATTGTAAAACCAAAGAAGAAGAGAGGTCGGCGGAAAAAGAATCCTGAACCGGTAGAGGAGAACGGCATGTGGGAAAACATGACGTCAGCTCGTACGCAACAGTGGTCACGGCGGGCGCGTTCCCCCAAGCCGCCGCCCACGCCGCCTTCTCCGCCGTCGGAACCTACTCCGCCCTCGCCACCGCCTCCGCCCAGCGACCCTTCCAGACCCTTCGTCTGTCGCCACTGCGGCGTCGGCTTCGCCAGAGAAAAGGCTTTGCAGTCGCATGCTAGGGTCCACGGCGGTGACTCTCCAGTAGAGTGCGGGTCGTGCGGCGAACTTTGCTGGTCACGCGAAGCACTTGCCACCCACACGCAACAGCGCCATCCACACCTGCCGCCACGAGCAGATCAGCCTGAACAGCCTTACGACGACACCGATTCCGGTGACGACATGGAGTTCCGTCTGTCGCCGCTGTCGGGCGGACGTGAGCGCGCGGTGTACGACACGATGCGCGGCCCGGAGCTTTTCTGTCAGGACTGCGGTGTGGCCTTCCAGCGTGCTGACCTGCTGAGGCGACATGTGGCCGCCGCGCACAGCTACAAGCGGCACGACAGCTCGAGCAGCACGTGGGCCGAGCACACGTGCGACGTGTGCGGCGAGGGGTTCGCGGACGCGCTGCAGCTGCTCGCGCACGCCGAGGGACACGCCGAGCGGCACCGCGCGCCCGCCGCCGCGCCCAGGTTAAAAAAAATGGCAAGAGGTCGAAATAATACCTCATCCTCAAATAGTTCGCGGCAATTCCCCTGTAGAGTGTGCGGAAAGGTGTTCGGTTCGCGCAGTTCGCAGCAGATCCACATCCGCATCCACACGGGCGAGCGACCATACGCATGCCGGTTCTGCTGGAAGGCCTTTGCAGACGGCGGCACGCTTCGGAAACACGAGAGGATACATACAGGAGAGAAGCCGTACGCATGTGCGGTGTGTCCGCGAGCGTTCAACCAGCGCGTCGTGCTGCGGGAGCACGTGCGCTCGCACCACTCCGCGCCCGATAGGCGCGCCAACGGTGGTCCCGCGTACTGCTGTGTGGTGTGCGGGCGCACGCTGCACTCGAGCACCGAGCTGGTGCAGCACCTTATACAGCACTGCGACGCCAACACAGCGCTCAAGAGACAACCTCAGACGGGGCCACGGAAGTACAAGAGACGGCGAAAGCTGAAGGCAGAACAGTCACCCGCGTCGCCGCGCGAGTGGGAGCGCACTTCGGCGTCGCCGTCGCCGCCGCCCCCCTCCCCCCCGCGCTCGCCGTCACCTGCGCCGCAGTCGCCCGTCGCGCGCCGCCGCCGCCGACGCGCCGCATCGCCCGCGCGTCGCCCCCGCATGATACACACGGAGGAGCCGCGGGCGCGTAGCAAGCAGGCCGCCAGCCCGGCGCGGCGGCGCCGCCCGTCCCCTGCGCACGCAAGACCGCGCCGCCCGCCGCGTCGCCCGGCCGACGACCTGCGCGCCATCCGGCCAGCCGAGTCGCCGCCGGACGCCGGCGGGCCCTTCAAGTGCGAAATGTGCGCGCTCGAGTTCCCGCGCCGCGACGCACTGCTGCTGCACGTGCCGGTGCACATCTGA
- Protein Sequence
- MDGEAEEFNLQWEEEVEVKHSPGVVETEEVISGLDNVQHTAYSNMTSEEMMSTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVIPGGQERYQVEVPMEHLTHPEMVLKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGLRYVRKCDLMNHLKVHAFVPDNQDSIDYEDVLDNNEIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPKPPPTPPSPPSEPTPPSPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALATHTQQRHPHLPPRADQPEQPYDDTDSGDDMEFRLSPLSGGRERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFADALQLLAHAEGHAERHRAPAAAPRLKKMARGRNNTSSSNSSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSTELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKAEQSPASPREWERTSASPSPPPPSPPRSPSPAPQSPVARRRRRRAASPARRPRMIHTEEPRARSKQAASPARRRRPSPAHARPRRPPRRPADDLRAIRPAESPPDAGGPFKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064911;
- 90% Identity
- -
- 80% Identity
- -