Xare022577.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010001244.1:58338-69768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.87 68 4.7 0.5 2 23 28 50 27 50 0.91 2 23 0.064 5 8.2 0.0 2 23 75 97 74 97 0.94 3 23 0.041 3.2 8.9 1.3 2 23 120 141 119 141 0.96 4 23 2.5e-05 0.0019 19.0 1.5 2 20 146 164 143 166 0.88 5 23 2.1 1.6e+02 3.5 1.6 3 23 205 226 203 226 0.87 6 23 0.0032 0.25 12.3 0.1 1 23 233 256 233 256 0.93 7 23 0.00038 0.03 15.2 0.3 1 23 261 283 261 283 0.97 8 23 3.2e-06 0.00025 21.8 0.7 1 20 289 308 289 311 0.94 9 23 0.084 6.6 7.9 1.3 2 23 351 373 350 373 0.94 10 23 0.048 3.7 8.6 0.3 2 23 399 421 398 421 0.94 11 23 0.1 8 7.6 1.2 2 23 444 465 443 465 0.96 12 23 4.8e-05 0.0037 18.1 1.4 1 21 469 489 469 490 0.96 13 23 1.9 1.4e+02 3.6 0.0 2 23 503 525 502 525 0.89 14 23 0.0032 0.25 12.3 0.3 3 23 550 570 548 570 0.96 15 23 0.00061 0.047 14.6 1.3 1 21 574 594 574 595 0.96 16 23 4.9 3.8e+02 2.3 0.1 1 23 636 659 636 659 0.93 17 23 0.42 33 5.7 0.2 2 23 685 707 684 707 0.95 18 23 0.0017 0.13 13.2 0.6 2 23 731 752 730 752 0.95 19 23 0.00024 0.018 15.9 0.0 1 23 756 779 756 779 0.97 20 23 0.48 38 5.5 0.8 1 23 783 806 783 806 0.97 21 23 4.1 3.2e+02 2.6 0.4 1 23 811 836 811 836 0.87 22 23 0.00014 0.011 16.6 2.0 1 23 845 868 845 868 0.97 23 23 0.00022 0.017 16.0 0.4 1 23 878 901 878 901 0.95
Sequence Information
- Coding Sequence
- ATGCACATCGCAAAAAGGAACGCGCAGATCGTAATACAATATACCACTGCTTATCCGTTTAGACTCCCGGAGAGTTCCATCGTATGCGTGTATTGCTGCGAAAGCTTTGACGACGCTCCACGCTTCAGGAAGCATATGGACGATGACCATGAGGTAGTCAACGTCAAAGTGGCGTTCGCGCACCTTCACGAAGGATATATTAAAGTTGACTCCACTAACCTACGCTGCAGAATTTGCCCAGAGACATTTAACAAAATTGAAGAAGCAGCTATTCATTTAAAAGTTGTTCATAAAGAAAATATTAATCTAGAATACGATGTAGGTGTCCAACCTTTTAATATACAAAATGATAAGTTGTCTTGCGCGGTATGCCACGCCAAATCTTCCAACATCCGGAGTCTAAGCCGACATATACAAAAACACTTCTTCCAATGCACGTGTGAACTTTGCGGCAAATCCTTTGCATCTTCCACCTCTTTACAAAAGCATTTAGAGTTTTCCTGTCCTTTAATACCGAAACAGCGGAGGTGTAGAAAGTGTAGAATGGTTTTGTTTTCAACTGAAGACCAGAAGAGACACTTTGAAGACAACAGACAATGCCGACAACATCTTTGTTCAGTCTGCGGTGATAGATTCAGTACATGGAAGATAAAACAGCACCATATGGAGGAAGCTCACGGTATTCCCAAGAAAGTCTATCCTTGTCCTGAATGCGGGATGGTATTCAACAAGCCAAATATCTTCAGAGCACATTTCAAAATAGTTCACACTGATGAACATTTTGAATGTCCTAGCTGCGAACGCAAGTTTGATACCAAATATGTTTTAGATAGGCACATGGTTGTACACTCCAATGAGAGGCTGTTCTCTTGTGATATTTGTTCCAAATCTTTCCCCAGAAAGTCTACACtgagacagcatatgtggatacatagcgaagtgaagcgattcgaatACGAGATGCGTCCGTTGTCCATCGCGCGACGGAATGCAGAGACTATCGTCAGTCACGCCACCGTATACCCCTTCCGACTGCCGGAAACTTCCCTCATGTGCGTATACTGCTGCGAGTCGTACACCGACGCCACATTGTTCCGACAACACATGAAGGAAGAACATTCCTCATTTAAAGTCCAAAACGCATTCGCACATTGCGCTTATGAGAGTTACCTCAAAATAGACTGCACTGAGATGTCCTGCAGGAAATGCTCGGAACCTTTCGAAAGACTCGAAGAAGTTGCTAAACATTTGAACGAAAAACATGACGCCAAAATCAATTTTGACTGCCAATTGGGATTGCATCCATTCAAATTTTCTCAGGAAAAGCTTATGTGCGGGATTTGTGATCTCAACTTCCCATGTATGAGGCAGCTGAGTCGACATATGTCTTCGCATTATCAGAATTTCACTTGCGATTGTTGTGGAAAATCGTATACGACCAACAGCTCGTTACAACAGCATATTAGAGCTAAAGATAATTTAATTAAAATCGATATAACTAATTTGAAATGTAAGATATGTGCCCAAGAAATTGAAGATGTTGACGGACTTATGAGGCATTTGTATGGTGAACATAATAAGCCTGTCAAATTCAATGTTCCGTATGGTGTTCTACCTTATAAGCAAAACTCTGAAAACCAATGGATTTGTGTGTATTGTAACAAAATATTTACTGCCTTCATATCTTTCAAACGACATATAGTTACTCATTTCATGAATTATAGTTGCGATAAGTGTGGTACGACTTTCGTGTCGGACCACGCCTTAAGAGACCACCATAGGCAAGTAAAATGCTTCAGAACAGCTTACAAACCCCGTAACGGGAGGGTCTTAAAACCTAGAACTAATGCAGAAATTATCCTCCAATGTTCCACTGCGTGTCCCTTTAGGACATGGAAAAGTAACTTCAATTGCGTGTTCTGTAGGGTTCAAAGTAATGAGCCGAGTGGACTTCGTATGCATGTTGTCACAATACATGCCAATTATGACGTCAAAGCCGCGTTCTATAAGAAATTAGGGAAAGATTTTCTAAACATTGATATCACTGATCTCCAATGTAAACTTTGTTTTATGCCTATAGACTCTTTTGACAATTTGATTTATCATCTAAAGAATGATCACCAGCAACCTATCAATACTGATGCACAGTTAGGTGTCCTACCGTTCAGATTAAACGATGGCTCTATATGGAAATGCACGATATGTCCCAACGAATTCAAAGACTTCGTCTCTCTAAAGAAGCATACTTCGGAACACTTCCAAAACTACGTATGTGACACCTGTGGAGAGGGTTTTATAACAGAATCTGCAATGATAGCTCACACTAAAGTACCACACGAGAACAAATATAACTGCAGCCGGTGCGTCGCCACATTTTTCTCACTAGACGAGCGGAATTTACACGTAAAAACACAGCACACATCCATGCCATATATGTGTGTGTACTGCAAAGAGAAACCACGTTTTGCCAACTGGGAGGTTCGCAAAAAACATCTAATGACAGTCCATAATTATAAGACTGGAGCTGATAAATACGAATGCACGACATGCCAAAAGTCTTTCAAGACGAGATCGGGAAAGTACAATCATATGGCGAGAGTACATCGAATAAAAAAAGATACGGAACTGAATTACCCTTGTCCGAATTGCCCCAAAGCGTTTACGACTAAATTGTTTCTGGATAAACATGTCGCCAAAAAGCACTTTGATGTGTGA
- Protein Sequence
- MHIAKRNAQIVIQYTTAYPFRLPESSIVCVYCCESFDDAPRFRKHMDDDHEVVNVKVAFAHLHEGYIKVDSTNLRCRICPETFNKIEEAAIHLKVVHKENINLEYDVGVQPFNIQNDKLSCAVCHAKSSNIRSLSRHIQKHFFQCTCELCGKSFASSTSLQKHLEFSCPLIPKQRRCRKCRMVLFSTEDQKRHFEDNRQCRQHLCSVCGDRFSTWKIKQHHMEEAHGIPKKVYPCPECGMVFNKPNIFRAHFKIVHTDEHFECPSCERKFDTKYVLDRHMVVHSNERLFSCDICSKSFPRKSTLRQHMWIHSEVKRFEYEMRPLSIARRNAETIVSHATVYPFRLPETSLMCVYCCESYTDATLFRQHMKEEHSSFKVQNAFAHCAYESYLKIDCTEMSCRKCSEPFERLEEVAKHLNEKHDAKINFDCQLGLHPFKFSQEKLMCGICDLNFPCMRQLSRHMSSHYQNFTCDCCGKSYTTNSSLQQHIRAKDNLIKIDITNLKCKICAQEIEDVDGLMRHLYGEHNKPVKFNVPYGVLPYKQNSENQWICVYCNKIFTAFISFKRHIVTHFMNYSCDKCGTTFVSDHALRDHHRQVKCFRTAYKPRNGRVLKPRTNAEIILQCSTACPFRTWKSNFNCVFCRVQSNEPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNIDITDLQCKLCFMPIDSFDNLIYHLKNDHQQPINTDAQLGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCVATFFSLDERNLHVKTQHTSMPYMCVYCKEKPRFANWEVRKKHLMTVHNYKTGADKYECTTCQKSFKTRSGKYNHMARVHRIKKDTELNYPCPNCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -