Xare004725.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000138.1:38876-42024[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0071 0.55 11.2 2.5 1 23 14 37 14 37 0.91 2 17 7.5 5.8e+02 1.7 0.1 2 23 66 88 65 88 0.89 3 17 0.0039 0.3 12.1 1.7 1 23 134 156 134 156 0.95 4 17 0.16 13 6.9 0.0 3 23 185 206 185 206 0.96 5 17 0.0045 0.35 11.9 1.9 1 23 226 249 226 249 0.96 6 17 9.3e-06 0.00072 20.3 0.2 1 23 254 277 254 277 0.96 7 17 0.0026 0.2 12.6 2.2 1 23 282 305 282 305 0.96 8 17 6.1e-05 0.0048 17.7 0.4 2 23 308 330 308 330 0.96 9 17 0.0035 0.28 12.2 1.3 2 21 338 357 337 358 0.94 10 17 0.00099 0.077 13.9 1.7 1 23 412 435 412 435 0.96 11 17 0.73 57 4.9 0.0 2 23 508 531 507 531 0.93 12 17 9.1e-06 0.00071 20.3 0.1 3 23 538 559 537 559 0.94 13 17 0.0018 0.14 13.1 2.9 2 23 564 586 563 586 0.94 14 17 0.0051 0.4 11.7 5.1 1 23 591 614 591 614 0.96 15 17 1.1e-05 0.00086 20.1 5.0 1 23 618 641 618 641 0.97 16 17 0.00013 0.01 16.7 0.3 2 23 648 669 647 669 0.96 17 17 9e-06 0.0007 20.3 0.3 1 23 675 697 675 697 0.98
Sequence Information
- Coding Sequence
- ATGTCAACTGCGCTTCCATTCAAATTCTTCATGAACAGATTCCGTTGTTTCTATTGTTCCAAAGATTTCACTGTTTGCGAGGAGTTGAAAGAACACACAGTTTTGGAACACCCTCACTGCGATATCACTTTCAAATCTATGAAATTACGGAACAGGTACGATGGAGTACAAATCAAAATTGATACTTCTTCCCTGTCTTGCAAATTATGTTTTGTGTCCCTACAAGGTTTAGAAGATTTGGTAGATCATTTGAGCAAAGAACACAAGGCCAAATGCGACATTTCTGTCGAAAATGGTTTGCCTGGGCCGTACGAAGGCTGTACCTCTGAGAGGCGACGGAAAAACTTGAAAATTCTATTCAACCACACTACTATAATGCCATTCAAATGGCGAGGCAAATACCTTTGCTTTTACTGCGGCAAAAACTACACTGAATACATTGAATTTCGAAAGCATACAAAAGCCCACGGACTATGCACAACGAAAGATTACTCCCTAAAATTAATAAAAGGAAATAATGTCGAAATTAAAATCGATGTCTCGGAAATCGGTTGCGATATCTGCAACGAGCCATTTGGCAGATTCGAGGAAATTATCGACCATCTGATCAGTAAACACAATATGGAGTACAACAAAAATATCGATATACCTTTCCAGGAATATCGATTAGTGGATTTTCGATGCTTGCATTGCGAAGAACAGTTTTCCTACTTCGGATATTTGGTTAAACATGTTAATAATGTCCATCCTCAAAACTGTTTCATCTGCGACGATTGTGGAGTGACTTTCAATAAAAAACGGGACTTGGCTATACATATAAGAAATTATCATAGGCAGGGAGGGTATCCATGTGATTTGTGCCTGAAAAACTTCGATACTCACCTAACTTTGCGTAGACATCAGAATAATATGCATTTTCGGCAGTGCAAGAGGTGTGGTTTGCGGTTTGCGTCTCTGTCTCTTTTGCAAAAACACGTGCAAGTTGATCATCCCCAAAATGAGGGTAATATGAAATGCAGTTACTGTTCGAAAGAGTTCCATACATCTTTAGGCTTGCGACAGCATATAAACAAGTGCAAAGTCAAAATCATTTCGCATGTAGAACCCCATACCTCTTTTCTAGACGACAGCAACATAGAGCCGAAGAAAAAGCAAAATATTCTCCAAATTCGCCAAAATATACAGTGTGTTTTAAACATGTCGACTGCAATTCCGTTCAAATTCTTTTCCAAATACTCCTGTTTTTATTGCTCAAAAAAATTCGTAGAATTCGATGAATTGCGGCAACACACCAATCTTGAGCATCCTGTTTGTGACCTGAAGTCTAAATGCATGAAGAAATGCAAAGGAGAACGGATAGCTGTTAAAATAGACATTTCTGCTCTAGCGTGTAAAATATGTTGCCTTCCAATGCCTAATTTAGAAGATTTACTGAACCATTTAATAGTAGAACACAAGGCGAACTACGATACCACCATAAAGGGCTGCCTTGAGCCCTTCAGAGTTATAAAAGACAATATGCCTTGTCCTATATGTCCGGACACCGCATTTCGCTACTTCGGAATCTTGTTACGACATATGAACTCGGAACACAGTAACAACAACAGAATTTGCGACTTCTGCGGTAGGAGTTTTAGAAATGCAGCGAATCTCAACGTCCACATCACGTACGCTCACACGGGATCATGCGAATGTGATATTTGCGGAGTCAAATACAAAAATCAGTGGTGTTTGGCAAGACATAGAGCCAAAACACACAACGCGAAGGACCATAAGTGCCCAAAGTGTCCTGAGCAGTTCCAATCACAGTACCACAAACAGAAACATTTAATAAAAATGCACAATATCGGCCATAAATGCAGTTATTGTGGCAAAATGTTCACGAGAAACTCTTTTATGAAAGACCACGTGAGGAGGACGCATTTGAAAGAGAAAAATATTCCGTGTTCCATTTGCAATGAGAAGTTTTTCGATAATTACCTCCTTAGGATGCATATGGTTAAGCATGAGGGTGATAGGAAGTTTAGTTGTGGTGTATGTGGCAAGGCCTTTTTGAGACGAAGTAATCTAAGCTCTCATATGGAGATGCATAAGAAATATGGGCATGTTCAGATGCAGATATGA
- Protein Sequence
- MSTALPFKFFMNRFRCFYCSKDFTVCEELKEHTVLEHPHCDITFKSMKLRNRYDGVQIKIDTSSLSCKLCFVSLQGLEDLVDHLSKEHKAKCDISVENGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKAHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFGRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLAIHIRNYHRQGGYPCDLCLKNFDTHLTLRRHQNNMHFRQCKRCGLRFASLSLLQKHVQVDHPQNEGNMKCSYCSKEFHTSLGLRQHINKCKVKIISHVEPHTSFLDDSNIEPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKYSCFYCSKKFVEFDELRQHTNLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLLNHLIVEHKANYDTTIKGCLEPFRVIKDNMPCPICPDTAFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRAKTHNAKDHKCPKCPEQFQSQYHKQKHLIKMHNIGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCGVCGKAFLRRSNLSSHMEMHKKYGHVQMQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01533270;
- 90% Identity
- iTF_00450362;
- 80% Identity
- -