Xare013013.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000450.1:289652-297885[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00095 0.074 14.0 2.5 1 23 129 151 129 151 0.96 2 13 0.00038 0.029 15.3 0.3 2 23 157 178 156 178 0.96 3 13 0.01 0.8 10.7 0.7 3 23 185 205 184 205 0.90 4 13 2e-06 0.00015 22.4 1.5 2 23 223 244 222 244 0.97 5 13 1.4e-05 0.0011 19.7 2.4 1 23 253 275 253 275 0.96 6 13 2.6e-05 0.002 18.9 4.7 1 23 281 303 281 303 0.98 7 13 2.9e-05 0.0023 18.7 3.4 1 23 309 331 309 331 0.98 8 13 2.7e-08 2.1e-06 28.3 1.1 1 23 337 359 337 359 0.95 9 13 2.6e-06 0.0002 22.1 2.9 1 23 365 387 365 387 0.98 10 13 2.1e-06 0.00017 22.3 0.9 1 23 393 415 393 415 0.98 11 13 0.0028 0.22 12.5 6.4 1 23 421 443 421 443 0.97 12 13 1.5e-06 0.00012 22.8 2.1 1 23 449 471 449 471 0.98 13 13 0.00041 0.032 15.1 0.5 1 20 477 496 477 499 0.94
Sequence Information
- Coding Sequence
- ATGCTTGACATAACTACATCATGTCGGACTTGCATGAAGGACAATGTGACTTTGGTGGGCATATATGAAATAGTTAATATTGAAGAAAATTGTCTTCAATTAGCCGAATTGCTTGTGCAGTCTACTCCAACAGAGGTGTCTAAGGAGGATGGATTACCACAACACCTTTGTGATGCTTGTGTTAAAATGCTGCAAGTTACTTACACATTTCGTAAGCAGGCGGCTAGAGCACAAGAAGAGTTTAAAAGACTTCTGCAAAGTAATGTGAAGAGGGAACCACAGGATGTTGACCTTAAAACAGAAAATGATCATGACTATTTGGAAGTTTACGAAGATTTCCAATTCAACCCAGATTTTTCCAAAACTGAGTCCGAGGAAAAGGAATATACATGCACTAAATGCAATAAACAGTTTGCTAAAGAGAAGAAATTCTTAAAACATTTAGAAGGACATGAGAATTTGTCACTAGAGTGTACCATTTGTAAGAAGTTATATAATAACCAGGCATCCTTAGACAAGCATATAGCCAAGCATAATAAGAAGGACATGTCATGTATAATTTGTAACAAAAATTTTGATAATGAAACACATTTATTGGAACATATGGTGGAACACACTGGTGATATTCAAGTTAAAACTGAACATGAGACTGCAGAGCAAAAACTGCAATGTTCAGAGTGTGGCTTAACATTTACAAAGCAAAGATCCCTATCCATGCATATGAGAAAACATAGAAATAAGAATGAGAAAAAAGAATTCATTTGTGATACATGTGGAAAGAACTTTACTATGAAACATTTGTTGAAGAGACATTTGGTGATGCACAGTGAAGTAAAGCCACATAAATGTGTAAAGTGTTCCAAAACATATTCCAGACGTGATCAGCTGATGTCTCATATGTACACACATAAAGAAAACAAGCCGTATGTCTGTTCATATTGCAAGAAGAGTTTTGCCCAGATGTGCAGCTTAAAGGACCATGTGCGTAGTCACACTGGAGAGACACCATTCCTATGTTCCGAGTGTGGCAAGGGCTTCACCAATAACTCCAACCTAAGACAGCATATGATGAGACACTCTGGACTCAAGCCTTATGCCTGTAATATGTGTCCTAAGACATTTTGTACCAAAGGTCAAATGACATCTCACATGTCGACACACACGGGTGAGCACCCATACAAGTGCGAGGAGTGCGGTGCTTCCTTCACTAAGCAGAACTCTCTGAAGAAGCACTCCATGATACACCTAGGTGTCAGGCCCTTCGCTTGCGAAACTTGTAATATGAGGTTCACTTGCAAAGACCACCTAAAGCGTCACACTAGGATTCATACAGGAGAAAAACCATACAAGTGCAAGTACTGTGAGCGAGCGTTCTCGCAGAGTAATGACCTGGTGAAGCACACGCGTCAACACATTGGACAGAACATTTACCAATGCACAATTTGCGGTTCGCGGTTCCGCCTGCTATCAGAGCTGAAGCAGCACTATCCTGTACATTTCCTGAATGGCAAGGATGATGCCAATGACCCACAAAACAGTACCAAAGATCAAGCTCTTAAAGAAACACTCGACAATGACGGTTGCCCCAAAGACTTCCCTATGTTGCAACTAAAACCTTCTTCAGACTTCAACCTGTTGTCCTTCAAAAATGATAAGGATCTTCCTCTTTTATTAAAACCAGTCACAGTTGATAAGGATCTTCCTATGTTGTCTCTTAAGCCATCTCCATCTGATCACTTTGATTCTTTGTCAGATAAAACTCAGTCTAACTCCAGTGAGAATAGGATTGTTATTACTATCAATAGCTGTGATACGAATGGTGTTGTTAACGGGATTACTATTAATTTACCGCCTAAAGAGAGCTAA
- Protein Sequence
- MLDITTSCRTCMKDNVTLVGIYEIVNIEENCLQLAELLVQSTPTEVSKEDGLPQHLCDACVKMLQVTYTFRKQAARAQEEFKRLLQSNVKREPQDVDLKTENDHDYLEVYEDFQFNPDFSKTESEEKEYTCTKCNKQFAKEKKFLKHLEGHENLSLECTICKKLYNNQASLDKHIAKHNKKDMSCIICNKNFDNETHLLEHMVEHTGDIQVKTEHETAEQKLQCSECGLTFTKQRSLSMHMRKHRNKNEKKEFICDTCGKNFTMKHLLKRHLVMHSEVKPHKCVKCSKTYSRRDQLMSHMYTHKENKPYVCSYCKKSFAQMCSLKDHVRSHTGETPFLCSECGKGFTNNSNLRQHMMRHSGLKPYACNMCPKTFCTKGQMTSHMSTHTGEHPYKCEECGASFTKQNSLKKHSMIHLGVRPFACETCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFLNGKDDANDPQNSTKDQALKETLDNDGCPKDFPMLQLKPSSDFNLLSFKNDKDLPLLLKPVTVDKDLPMLSLKPSPSDHFDSLSDKTQSNSSENRIVITINSCDTNGVVNGITINLPPKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072253;
- 90% Identity
- -
- 80% Identity
- -