Xare013413.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- clz9
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000467.1:246981-248642[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.5e-10 5e-07 29.8 0.1 7 43 10 45 9 46 0.94
Sequence Information
- Coding Sequence
- ATGACTGATAGGCAGAAGGCCCAATTAAAGGCCATGGAGGCAGTCAAAAACGGGGCCTCAATTTCGGCCGCTGCTAGGCAGTACGGTATCCCACGGTCAACGTTGGATGATAAAATACGCGGCCGTTATGCTGTTGaatgctccaagggaccggctacggttttatcgaaagaagaagaagatcatttacgaaaccggattatttttatggcagatagtgggtttccagtgactaaggcacaggttttggatagcgtcagtttacttgtaaaaaaaatgaagcgagagaacccgtttcaaaatgacagaccaggtcgtcactggtttgaagcgttcataaagcgacatcctgaagtaggccagcgagtggcccaaaatttgacgcaaacccgtgctttagtcaaagagatcaacctaagagcatggtttaaagaagtggaagattattttattatgacacatcttgaagaggcagcaaaagatccccaaagaatatttaattgtgatgaaagcgctttctttttgtcaccagcagataaccgagagttagcaaaacgaggcgcaaaaaatgtttataacattattcctagcagtgaaaaagagtgcgtgacagtcctggtcacggcaaacgcagcaggagaattggcacctccaatggtgctattcaagttaaaaacaataccatacaaaatatcaaatactgcaccaaaggactggggattaggagttactccaaagggttggatgacaggcgagtcattttatgaatacatggccaatgtcttttatccttggatcgtaaaaactaatattgagttcccaataatatttttcttagatggacattgctcacacacgacgcttccactaagtaatttatgtcgggaaaaaaacatccaattggtcgcattatatcctaatgcaactcatttaatccaaccgatggatgtggctgtttttcgacctcttaaaaggatATGGAAGAGATCAGTATATGACTGGCGAAATGACAACCAGTTCATGAAACTTCGCAAGGAACATTTCTGTCCGCTGCTACATAAATCTCTCATGCAATTAGATCCTAACTCAATCAAGAATGGATTTCGCAAATGTGGGTTGTCACCTTTTGATGCAAACGGCGTTGATTATTCCAAGTGTGTAACAAGTCACCCCAAAAAAACAGCCAAACCAAATAATGTTAATCAAATACAACCAGATACCATTAGCCACTTCAAATTTTTTGAATCCCAAATAAGTCCTGAAAATCTCAAAGCTTTTTACAGCAACAGGAGTCCAACTTGGAAAGGGGATAAATCCTTAGAAGGATTATTCAATATCTGGAGGCAAATGAATCCTCTAAATAATTTAACGACAGAAAGACGGATCAATAGTGGCTCTAAGACTTTGACGCCAGTTCAAGACACCTCTAATATCAACGAATTTCTATCATCCGGAGATATTGGTAACTTCACAGGTCTGACTGACATCTTGGACTCAAATCTGAACTCAAATGACTTCAGTGACTTAATGACTGAAAATGAAAACCATGCAGGAAAGATAGAGGTTTATGAAAATATTGACGGAATACTGACAAAAATCATAGATGTGGAAATCCCAACAAATGAGCCTTCATATATAATTATATTTTTTAATACATGTTGA
- Protein Sequence
- MTDRQKAQLKAMEAVKNGASISAAARQYGIPRSTLDDKIRGRYAVECSKGPATVLSKEEEDHLRNRIIFMADSGFPVTKAQVLDSVSLLVKKMKRENPFQNDRPGRHWFEAFIKRHPEVGQRVAQNLTQTRALVKEINLRAWFKEVEDYFIMTHLEEAAKDPQRIFNCDESAFFLSPADNRELAKRGAKNVYNIIPSSEKECVTVLVTANAAGELAPPMVLFKLKTIPYKISNTAPKDWGLGVTPKGWMTGESFYEYMANVFYPWIVKTNIEFPIIFFLDGHCSHTTLPLSNLCREKNIQLVALYPNATHLIQPMDVAVFRPLKRIWKRSVYDWRNDNQFMKLRKEHFCPLLHKSLMQLDPNSIKNGFRKCGLSPFDANGVDYSKCVTSHPKKTAKPNNVNQIQPDTISHFKFFESQISPENLKAFYSNRSPTWKGDKSLEGLFNIWRQMNPLNNLTTERRINSGSKTLTPVQDTSNINEFLSSGDIGNFTGLTDILDSNLNSNDFSDLMTENENHAGKIEVYENIDGILTKIIDVEIPTNEPSYIIIFFNTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055341; iTF_00121365; iTF_00121364;
- 90% Identity
- -
- 80% Identity
- -