Xare008000.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000251.1:64054-64431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-10 4.4e-07 29.9 0.0 1 38 21 57 21 64 0.89 2 2 3.5 1.8e+03 -0.8 0.0 9 19 115 124 115 125 0.83
Sequence Information
- Coding Sequence
- ATGAAGCCAACGGCAAAAAATTCAATAAAAGAAAAATCCAAGGTGAGGCGCAAAGTGTATACGGAGGAAAATCTGCAGAAAGCTCTGAAAGAAATAAGAAAGGGAATGAGCAAAAAACTTGCCGCGAAGACCTTTCAAGTGCCAAGAGCTACTTTGCAATTTAGGCTAAAACACCCAGAGCATAAATCTAAGCCAGGGCCTTGTACAGTATTAACACCTGAAGAAGAGCAGACTTTTGTTAATTGGATAAAAGTCAGTAGTAGAAAAGGTTTCCCTAACAGAAAAGAGGATATAATTAAGAGCGTTTCTGATTTTCTGAAAAAACCAAAAGGCCGAGTTCTTTTAAAAATGGTGAGAAGTGGTTTAAGTTGTTCTTAG
- Protein Sequence
- MKPTAKNSIKEKSKVRRKVYTEENLQKALKEIRKGMSKKLAAKTFQVPRATLQFRLKHPEHKSKPGPCTVLTPEEEQTFVNWIKVSSRKGFPNRKEDIIKSVSDFLKKPKGRVLLKMVRSGLSCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -