Xare018496.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000759.1:262315-264737[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-08 9.1e-06 25.7 0.1 1 39 11 49 11 55 0.90 2 3 4.3e-11 2.3e-08 34.1 0.2 1 40 136 175 136 180 0.88 3 3 9.6e-10 5e-07 29.8 0.1 2 37 259 294 258 302 0.90
Sequence Information
- Coding Sequence
- ATGTTTACGCAAAATAAGCGAGCTATGTGGTCCGAAGAAACTATGGAAGCAGCCATGACTGCAGTAAAACAGGGAACGTTGTCACAGAGAGCCGCAGCAGTTCGATATTGCATTCCTAGGATAACACTCCGGGACCACTTGAAATCAGGAAGCATCGTCAAACGCCTAGGCCGAAAATTAATGATGGACGAAACACAAGAAAATACACTCATTAGTAAAATAATGAATCTATCGAAAAGAGGAATGTCTCTTACACCGGAATTGATTCGTAGAGAAGCGTTCAATTATTGCCTTGAATATAATATTAAGCATAATTTTAATATCACTACGGGTCTTGCTGATTTCATTAGAAAGTCCCTGAAACGATTGTCAGCTGTGTCTGTGCAAACTAAGCGAGCTATGTGGTCTGAAGAAACTTTGGAGGCAGCCATGACTGCAGTAAAACAGGGGAAGTTGTCACAAAGAGCCGCAGCAGTTCGTTATAGCATTCCTAGAATGACACTCCAGAACCACTTGATATCAGGAAGCACCGTCAAACGCTTAGGCCGAAAACTAATGATAAACGAAACGCAAGAAACGAAACTCATTAGTAGAATAATGAAACTATCGGAAAGAGGAATGTCACTTACACAGAAATTGATTCGTAGAGAAGCTTTTGAGTTTTGCCTTGAATATAACATAAAGCATAATTTTAATATAACTACAGGTCTTGCTGATTTCATTAAAAAGTCTTCGACGCGAGTGCCGGCTATTTCTAAGCGAGCTATGTGGTCCCAAGAAACCTTGGAGGCAGCCATGACTGCAGTGAAACAGGGGAAGTTGACACAGAGAGCCGCAGCTGTTCGTTATGGCATTCCTAGGTGGACACTCCGGAACCACTTGATATCAGGAAGCACCGCCAGACGCCTAGGCCGAAAATCAATCATGAACGAAATGCAAGAAAAGAAACTCATTAGTAAAATAATGAATCTATCGAAAAGAGGAATGTCTCTTACACCGCAATTGATTCGTAGAGAAGCTTTCGATTTTTGCCTTGAATATAATATAAAGCATAATTTTAATATCACTTTGGGTCTTGCTGGTAAAGACTGGCTTAGGGCGTTTTTGAAACGTCATCCCGACATTTTCAATAAACAATGA
- Protein Sequence
- MFTQNKRAMWSEETMEAAMTAVKQGTLSQRAAAVRYCIPRITLRDHLKSGSIVKRLGRKLMMDETQENTLISKIMNLSKRGMSLTPELIRREAFNYCLEYNIKHNFNITTGLADFIRKSLKRLSAVSVQTKRAMWSEETLEAAMTAVKQGKLSQRAAAVRYSIPRMTLQNHLISGSTVKRLGRKLMINETQETKLISRIMKLSERGMSLTQKLIRREAFEFCLEYNIKHNFNITTGLADFIKKSSTRVPAISKRAMWSQETLEAAMTAVKQGKLTQRAAAVRYGIPRWTLRNHLISGSTARRLGRKSIMNEMQEKKLISKIMNLSKRGMSLTPQLIRREAFDFCLEYNIKHNFNITLGLAGKDWLRAFLKRHPDIFNKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -