Xcam015954.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- gtf3a
- Assembly
- GCA_963678675.1
- Location
- OY783197.1:28428517-28433428[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0037 0.3 12.1 1.0 1 23 139 162 139 162 0.94 2 15 6.1e-05 0.0049 17.7 0.7 2 23 204 226 204 226 0.92 3 15 0.002 0.16 13.0 2.2 1 23 261 284 261 284 0.93 4 15 0.035 2.8 9.1 0.3 1 23 378 401 378 401 0.90 5 15 0.05 4 8.6 0.2 1 23 757 779 757 779 0.98 6 15 7.4 6e+02 1.7 1.3 5 21 907 923 905 927 0.87 7 15 0.24 19 6.4 2.6 1 23 1131 1153 1131 1153 0.97 8 15 3.6 2.9e+02 2.7 0.1 6 23 1163 1181 1163 1181 0.95 9 15 0.29 24 6.1 0.1 2 21 1221 1240 1220 1243 0.86 10 15 1.3 1.1e+02 4.1 1.1 1 21 1250 1270 1250 1273 0.82 11 15 0.19 16 6.7 0.3 2 23 1278 1299 1278 1299 0.90 12 15 9.5e-05 0.0077 17.1 0.7 1 23 1304 1327 1304 1327 0.97 13 15 1.8 1.4e+02 3.7 0.6 2 23 1336 1356 1335 1356 0.72 14 15 9e-05 0.0073 17.2 0.6 3 23 1362 1383 1360 1383 0.96 15 15 0.00016 0.013 16.4 0.6 2 23 1391 1413 1390 1413 0.92
Sequence Information
- Coding Sequence
- ATGCTGCACCCGCTGATGGAGTCGAAGAACGACATGGAGATGCACTCCAGCAACGACGAGAACATCGGAGCGCAGCTACCGATTTTTGACTCAATGATGGAATTACCATTGCCGTGTAAAACTTTCAACAAACTGAAGGATCCGTATATTAAATTGCAAAGATGCGATAAGATATGGAAGACTTTGCAGCTCATACGGACTATGCAAGAAGACGACGATAGCGAGGATGATACCAATTCAGAGGAGACTGAGAGTAATTGCGAAGAGGTCGAGGAGAGCAATAACAGTGGTTCTAAAACTGAAACGGAAAGACTCAGACCGTCGACACCCTATATTCCGTATAAACCAGATATCGGAAATGGAAACACGACATTGTCGAATTTAACTTTCGAAGTAACAAAGAGAAAACAACTTTTTCAATGCGAGACCTGTGGAAAGGAGTACAGGGAGAAAAGGAGCATGAGGGAACACTCCGAAAAAGTACACGGTATCTATGTACCGCTTCAGTATCACAAGAAAGTCAGCGTCAGTTCAGCTCAGCCGACTCAACCGGTTCAACCAGCTCAGCCAGCTCAGCCGGACCCAGTAGCAGAGGAAGATGACAACAGAAGATGCCCGACCTGTGGAAAGACATTCACGCGGAGGACAAACATGATAATACATTCGGAGTCCATGCACGGGGTTGCCATACCTCATAAGAGAAGGTACCGCAGGAAACCCTCGGAAGAGGAATTCGTGGTGCTTCAGCCAGAGTCGCAGTCGAAGGGTGAAAGAAGAGGACACTTTTGCCAAATATGCGGTAAGGTGTTCGTGGAGAGAAGATCCATGAAGAAGCACTCTCTAAGAGAACACGGGATTCATATACCACGGGTTCGTCCTGGTGTAAGAAGCGATACGATGGTGAGTATACCCAATAACGTAAACCTTCGATCGATGGTGATTAAAAGCACGAAGGAGGGAGAACTTCATCTAACCAAGGATAGATCGCAAATGAAGTTTTCGCAAAAGGGACGCGGGGGTCTGTCGACGGGATTGTGGGGACGCAGAGAATTCTCTGGAAAGTCAAAAATATTGCGTAACGAGAAACAGACTGTTTACAATAACAAGAGATTAAATGGCCGCGAGAAGAGTTACTTTTGTCCGACGTGTGGAAAGGGATACGCGGAAAATAGAGCCATGAAAATTCATTCGTTTCGAGATCACGGAATTTTTATACCAAAAGCAACGTCAGGGAAGAAAGCCAAGGAAGCGCGACAGTCGACGGGTGGTGGCTCGGACATTGAAGCGTCTAGGGTTAACGCGAGCGCGGAGAAGAAATCGGAAGTTCCGGTTAGAAGGTCAATGCGACACATGAGATCTCTGCCTACTAATGTCTCAGAATCTATTCAAAGCGAGTCTCTTGAGGGCACCGATGATCGGCATTCCCTACTTCCCGAAAATACGAATGATCGACGTTCCGCTCTGGCCGAGAGTGCGAGCGGTGAGCTTTCCGATTTTTCCGAGAACCCGTGGCGTTCTGTTCCTGCCGAGGATAAGAGTGGTCATCGTTCCGTTCCTGCCGAGGATAAGAGCGGTCGTCGTTCCGTTCTTGCTGAAAATACGAGCGGTCGGCGTTCCGTCCTTGCTGAAAGTACGAGCGGTCGGCGTTCCGTCCTTGGCGAGAGTACGAGTGGTCGCCGTTCTGTTCTTGCCAAGAGTACGAGTGGTCGGCGTTCCGTTCTTCGGAAGGAGAGAAAGACTATTTCTCCCGATAATTCAGACgacgaagggggtgaaaatatGGATGCGTCTTCCGCGTCACACGAGGAGACTCAACACTTGGAGGCTAAAACTCCGGGGGCTAGAAACCCGAAGATTCTTAACCCAGAAGAAGACATTGGAATGATTACTTGCGTATTATGTCAGAGAGAGTCAAAGTATATTAGAAACCACTTGACAATGTATCACAAGATCAAAGCCCCTGGAGAAATTGTGCGAATGTCGATAGAACGGACCTTGAATAAGCGTAAATCTCAATCGAAAGGAGCCAAAAACACTCCGAAGATATCTGAGCCGATCGAGCCTGTCGCACAGGAGGAACAGCAGAAAACTGATGATGCGGTGACTGCTCCTCGATTACGCGCCAGAGCTAACAGGACACCGGTCGAGCAAGTTACGACTCGTCATAATTTGAGAAAACGGAAGGCGGATTGGTCCTTTGCGAATCTGGACAGAAGCAGCGAGTCAAGTGACGAACCTCCTCTAAAAATGCCAAAAAAGGGTAATGGTTTCGTTTGCGACGTCTGCTTTGGAGTCTACGCGAACCCTACGAGCTGGTACAGACATACAAATAAACATCGAATGAGAGGAGAGACCAAGGAGAATTCCGCTACGTGGAAGAACAAATACAAGAATTCACGGTTAATGCAACAGCAGAATGCGACGGAAGACCATTCAGCGGACGCAACGATCGAAGATATTCTCCAAGATACCATAGATTCACTGGCGGAAGATGCACCTGTCGATGAAACGAGGCGCGATTCGTTTGAAGTCAACGCGGGATTCCAGGACGAAGACGAAGAAGTTGACGTAATACAGGTAGATTCGCCCAATGACAATGTCGATATAATCGTTGAAGATGCTCTGGTCGAGAAACCGAATGTTGTCGTAACTTCGCCAAATGACAGACAAATGGCTCCACTTGAATTGAAGAAACAAGAAGACGTAGAAACCAAATGCGTTTGCGGTATGGTATTCCATAATGCCTACGCCATGTTCGCTCACAAGATAAATTGCACGCACGGCAACAACGAGGAGACGGAAAATCAATGCGTGTCGCGAACCAGTAGCGACCGCGATTCGGGCATTGGAATAAGCATAAccataaaaaaaagaaacgattcATACGAAATAGTGAGTAAAGAAAACGGCGATGAACAGGTCTCGAAAGATTCGGCAACCTCGCAAGCCTTGGAAAACTTGTCCGGTAGTAATTCCCCAAACGTGATTTCCGACGATAGCGACGACGAAGAGGATGACGACGACTACGATGATGACACGGCGACTGAAGACGAATCTCAGGTCGATAGATCGTTGGCGTACAGCGTGAATCATAGCTTCTTAAAGTTGGAACTTGTTGAAGACGACGGTGATGTCAACATcgaggaagaagaagacgaagaaaatTGTACTCGGAACGATAAAGGCTACAGAGAAGAAACGAAGACAACGGAAGCTCCAAATCGGGACGGCAACTACGCGGGTGTAACGGATGAAGTAATCGAGTTTGTGGAGGTGGCGATGTGCCAGCAAATGGAGCAACAGCAAGAACAAGTGGAACAAGACGTTCTGGGTGATGGGGCACTAGAAGAAACCACCTTCAACGGCAAGGATCCTTTGATTCAATACACGCACAAGTGTCGAAAGTGTCGGAAACTTTTTGTCGGAAATCAAGAATTGCTCGAGCACGAGAAGAATCACCCAAACAAGGTCGACGAAGTCTGTCCCTGCGGCATGAATTTCAAGTCCATCGGTGACTTTGATGCCCACCTCCAACAATATCATCCGATCTGCTTGACATGTGGCTACTGCAAAATCAAATTCAGCGGAATCATCGAATACGACGAGCATCGCTGTCACGTCACCAAAGGAGTTGTGCGTAAAAAGCCGATTGCGACGATGAAGTGTCCCATTTGCGAGGCCCCCTTCACTTCGATGAGAAAATTGGACATGCACTTCGAAGCGAGACACAAGAACTCTGCGTTGCCGTATCAATGCTACAAATGCACGGAGAGATTTCCGAGTGTCGAGCAACGATCACTCCACTCGCAGGAGAAACATCCGGGTAAAGAAACCTGCAGTATCTGCGGAATCACATTCTTCACCGTCAGCACAAAGGCCGTTCACGAATCCTACCATCTCGGACAAGGCTATCCCTGCCACGTATGCAAAACGAGTTACTCCGTGCCGTCCTATTTGACAGGGCACATCAAGAGGGTTCACAGCATCGGCTGCGACGACACGGTCACGTGTGACATATGCGACAAAGCCATGAAAAGAAAGTCCTATCCGAAGCATATGAGGAATCACGACGACTTCACAGATTGCGAATTGTGCAAGAAGACGTTCTACAACACTCGTGCCCTAGAGAAGCACATCATGACGATACATCCGTATAACTATCCGCGAAAGGTCTGTCCCCACTGTCAAAGATCTTTTCCGACAATAGATCAATTGAGTAAGCACATCACCGCACTCCATACGGACTACACATTGGATAACTTCCTGAGTCAGAGAACACTACCCATGTTACAAAGAAAACCGGATGCGAATTAG
- Protein Sequence
- MLHPLMESKNDMEMHSSNDENIGAQLPIFDSMMELPLPCKTFNKLKDPYIKLQRCDKIWKTLQLIRTMQEDDDSEDDTNSEETESNCEEVEESNNSGSKTETERLRPSTPYIPYKPDIGNGNTTLSNLTFEVTKRKQLFQCETCGKEYREKRSMREHSEKVHGIYVPLQYHKKVSVSSAQPTQPVQPAQPAQPDPVAEEDDNRRCPTCGKTFTRRTNMIIHSESMHGVAIPHKRRYRRKPSEEEFVVLQPESQSKGERRGHFCQICGKVFVERRSMKKHSLREHGIHIPRVRPGVRSDTMVSIPNNVNLRSMVIKSTKEGELHLTKDRSQMKFSQKGRGGLSTGLWGRREFSGKSKILRNEKQTVYNNKRLNGREKSYFCPTCGKGYAENRAMKIHSFRDHGIFIPKATSGKKAKEARQSTGGGSDIEASRVNASAEKKSEVPVRRSMRHMRSLPTNVSESIQSESLEGTDDRHSLLPENTNDRRSALAESASGELSDFSENPWRSVPAEDKSGHRSVPAEDKSGRRSVLAENTSGRRSVLAESTSGRRSVLGESTSGRRSVLAKSTSGRRSVLRKERKTISPDNSDDEGGENMDASSASHEETQHLEAKTPGARNPKILNPEEDIGMITCVLCQRESKYIRNHLTMYHKIKAPGEIVRMSIERTLNKRKSQSKGAKNTPKISEPIEPVAQEEQQKTDDAVTAPRLRARANRTPVEQVTTRHNLRKRKADWSFANLDRSSESSDEPPLKMPKKGNGFVCDVCFGVYANPTSWYRHTNKHRMRGETKENSATWKNKYKNSRLMQQQNATEDHSADATIEDILQDTIDSLAEDAPVDETRRDSFEVNAGFQDEDEEVDVIQVDSPNDNVDIIVEDALVEKPNVVVTSPNDRQMAPLELKKQEDVETKCVCGMVFHNAYAMFAHKINCTHGNNEETENQCVSRTSSDRDSGIGISITIKKRNDSYEIVSKENGDEQVSKDSATSQALENLSGSNSPNVISDDSDDEEDDDDYDDDTATEDESQVDRSLAYSVNHSFLKLELVEDDGDVNIEEEEDEENCTRNDKGYREETKTTEAPNRDGNYAGVTDEVIEFVEVAMCQQMEQQQEQVEQDVLGDGALEETTFNGKDPLIQYTHKCRKCRKLFVGNQELLEHEKNHPNKVDEVCPCGMNFKSIGDFDAHLQQYHPICLTCGYCKIKFSGIIEYDEHRCHVTKGVVRKKPIATMKCPICEAPFTSMRKLDMHFEARHKNSALPYQCYKCTERFPSVEQRSLHSQEKHPGKETCSICGITFFTVSTKAVHESYHLGQGYPCHVCKTSYSVPSYLTGHIKRVHSIGCDDTVTCDICDKAMKRKSYPKHMRNHDDFTDCELCKKTFYNTRALEKHIMTIHPYNYPRKVCPHCQRSFPTIDQLSKHITALHTDYTLDNFLSQRTLPMLQRKPDAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -