Basic Information

Insect: Xiphydria camelus
Gene Symbol: -
Assembly: GCA_963678675.1
Location: OY783197.1:21822168-21830105[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.31 25 6.1 4.9 1 23 370 393 370 393 0.95

2 8 6.7e-05 0.0054 17.6 0.6 1 23 398 420 398 420 0.90

3 8 0.00088 0.071 14.1 0.7 1 23 426 448 426 448 0.97

4 8 0.038 3.1 8.9 4.6 1 23 456 478 456 478 0.98

5 8 0.0056 0.45 11.5 0.1 1 23 501 523 501 523 0.97

6 8 8.6e-06 0.00069 20.4 0.8 2 23 529 550 528 550 0.97

7 8 6.5e-07 5.2e-05 23.9 0.7 1 23 556 578 556 578 0.95

8 8 0.00025 0.02 15.8 1.2 1 23 584 606 584 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.31	25	6.1	4.9	1	23	370	393	370	393	0.95
2	8	6.7e-05	0.0054	17.6	0.6	1	23	398	420	398	420	0.90
3	8	0.00088	0.071	14.1	0.7	1	23	426	448	426	448	0.97
4	8	0.038	3.1	8.9	4.6	1	23	456	478	456	478	0.98
5	8	0.0056	0.45	11.5	0.1	1	23	501	523	501	523	0.97
6	8	8.6e-06	0.00069	20.4	0.8	2	23	529	550	528	550	0.97
7	8	6.5e-07	5.2e-05	23.9	0.7	1	23	556	578	556	578	0.95
8	8	0.00025	0.02	15.8	1.2	1	23	584	606	584	606	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGACTACTTGGATCTGTGCCGACTGTGTCTCGTGAAAGATCGTGTCTCCGTGCCGATTTTCGAGGGCGAAGGCGACGTGCGACAAATTTTCTTGAAAATCGCCGCCTGCCTGCCGGTCAAGGTCGCTAGAGAGGATAAGTTACCGAAGAAGATTTGCGATGACTGTGTATATAAAGTAGAATTACTTTACCAATTTTGGAACACAACAGCAAACGCTGAGAAGCAGCTCTTACAATGGCTTGGAGAAGTTGGCTTGGAGGACAAGCAAAACTACGTGGCCGGGGTCCTCAACCCGAGCACGATGAAGCAGGAGCAAAGCGGTGAAAATAGATTAGACGGTGGTGTGATGCCGCAAGTCAGTGGGCATCAACCGAACATGGGTATAGGCATGATGGACAATATGGCGCTAGGAATGCCCATGATTATTTCCACTGCCAACCAGCCACAAATCACCCCAGTTCCTATGGACACGAGCGGTAACTCTGTGCAAACGGTTCAGGCCGTGCCAGGGCCAAGTACGCAAACCACGCACAATCAAATAGTGCAGAACCAAGCGGCTGCTCCTGCTCGAAACGACGAGGAAGAGGATACcagcgaggaggaggagaactCCGACGACGAGTGCGACGGAGATGACGGCCTACCTGTTAAAGAAGAGAGCGAAGAAGACCCTAGCAGTAGTAGAACCCTCGAACCTACAACGTTCGTCAATGTTTCACTGGCTTGCGACGAGGCGGGTCCATCAGGATTGCAACAACAAAAGATCGCGGAGATGCCCGAAATGGCATTGCCGCAGACGGCCGACAGCGATCCCAAGACTGGGGAAGGCGACGAGCTTCTAGGCGGCTTGTCGGGGATGCTGCGCCAAATCCTCTCGCCCGTCGATGAATCGTCGATGTCGTCGAGCGGTTGTTACAGCCTGATTCAACCATGTCCCCATTCGACATTCGTCCATACTACCATGTTACCGCCCCTGACTCTCGAATTATCTCCGATCCTCGGTTATCCCGAGTCCCAGGAGGCTCTGACGGAGCACTCTCCCTTGGAGCACAATcatcatcaccaccaccaccaccctcAGATCCTCGCCGAGTCACACGCGTGTCCGACCTGTGGCCTCGAGTTCCACAGTAAGTTCAAGCTGAGCTGTCACGTGAGAACGGCTCATCTGGAGCGTAAATTCATCTGCACGATATGCTCGAAGGCCTTCGCCACTCAGAACCACCTCAAGATGCACGAGGTGGCGCACTCCGAGGTGAAGCCCTTCGCTTGCGATCAGTGTCCCGGGACATTTCGTTATCGCACCCTCCTGGACCGCCACAGGAAGGTTCACGAGGTCGGTCGAGACAAACCTTACTCCTGTTCGCGGTGCTTCATGCGCTTCGAAACGCGCAACGGTTACAACCACCATGCGAAGACTCATAAGTCCGTCATCACCAATGCTAGTGTGACGGTTAACCCCGGCGCGTCGCTGAATTCCTCATCTTCGTTCCCCTGCGACTCCTGCGCTAAGGAATTTCCCACGATCGAATCCTTGACGAGTCACAAATTGGTGCATCGCTCGCGGCCACTCGTTTGCGAGGTGTGCGGCAAGGGCTTCACCCACAGGAAGTATTACGTGGTGCATCAGCGCATTCACACGGGAGAAAGACCTTACTTGTGCGCTATGTGCGGAAAGTCCTTCACTCAGGCGTCTACTTTGACGGTTCATCGGCGTTATCATACTGGGGAGAGGCCGTATACGTGCACTCAGTGCGGTAAGGGTTTCGTTACGCGGACCATCATGTTGAATCACATGAAGAAGCATTAG
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKVAREDKLPKKICDDCVYKVELLYQFWNTTANAEKQLLQWLGEVGLEDKQNYVAGVLNPSTMKQEQSGENRLDGGVMPQVSGHQPNMGIGMMDNMALGMPMIISTANQPQITPVPMDTSGNSVQTVQAVPGPSTQTTHNQIVQNQAAAPARNDEEEDTSEEEENSDDECDGDDGLPVKEESEEDPSSSRTLEPTTFVNVSLACDEAGPSGLQQQKIAEMPEMALPQTADSDPKTGEGDELLGGLSGMLRQILSPVDESSMSSSGCYSLIQPCPHSTFVHTTMLPPLTLELSPILGYPESQEALTEHSPLEHNHHHHHHHPQILAESHACPTCGLEFHSKFKLSCHVRTAHLERKFICTICSKAFATQNHLKMHEVAHSEVKPFACDQCPGTFRYRTLLDRHRKVHEVGRDKPYSCSRCFMRFETRNGYNHHAKTHKSVITNASVTVNPGASLNSSSSFPCDSCAKEFPTIESLTSHKLVHRSRPLVCEVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTQCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -