Xcam014245.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- PRDM10
- Assembly
- GCA_963678675.1
- Location
- OY783197.1:642408-647179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00061 0.05 14.6 0.4 2 23 472 493 471 493 0.96 2 14 1.3e-07 1e-05 26.1 0.7 1 23 527 549 527 549 0.97 3 14 0.2 16 6.7 1.5 1 23 557 580 557 580 0.95 4 14 0.61 49 5.1 0.1 2 23 598 619 597 619 0.95 5 14 0.011 0.89 10.6 0.8 3 23 633 653 631 653 0.94 6 14 0.034 2.7 9.1 3.0 1 23 670 692 670 692 0.91 7 14 0.015 1.2 10.2 2.5 2 23 701 722 700 722 0.96 8 14 0.018 1.5 10.0 0.1 1 23 729 751 729 751 0.98 9 14 0.0017 0.14 13.1 1.5 1 23 758 780 758 781 0.95 10 14 0.0047 0.38 11.8 2.8 1 23 786 808 786 808 0.98 11 14 0.0003 0.024 15.6 4.4 1 23 814 837 814 837 0.96 12 14 0.0024 0.19 12.7 1.7 1 23 870 893 870 893 0.97 13 14 0.00018 0.015 16.2 2.0 1 23 915 938 915 938 0.95 14 14 0.0054 0.44 11.6 3.4 3 23 976 997 976 997 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAGCGGGGCCCTCCCGAGGGGGCCCCCGTCGATCCCCCGGAGATGCCCGCCGTCGACAAAGCTGCGGACGTCAGCGACGGCTGGCCGACGTGCGAACCACCCAGGAAGATGAACAACAAACTGCTGTTCCTCACTGTCGAGTACGTGGAGGATCAATCGCGCGATTACGCCCGCGTTTTCCCCCCCTACGAACAGGTCTCCTTCTCGCCGCGGGCAAACTCGCCGCTCTCCGACTTCGAGCACCGTGTCAGTCCGCTGGACCCGAACATGAGTTCTGCGGCTCGATACTCGCCCACCCCCGTACAGCTGCCCACCTCGCCCTTTCACAACTCCGTCGTCATCCTCCAGGGGCCGTCTTCACCGCTGATAGCGCAACCAGAGCCGAGCGCGCGCACCGACGTCAATTACGCGACCCAGTTGGCAGATCGCGGCGTCACGGAAGCGGCTCCTCGCGCGGAGAGCTCTCCAGGCTTCGTCGTCGCCGGAAACGAGGAAGAGCTCGATTCCAGCGTCGGCGGAGAGTTGATACTGATGCAGGGTTCGACGCCGGAACTGGAAAATTCGTCAGCGGCGCCGCTCATGTTAACGGGAATGCCGAGCTCGGACTTTGCCCTGACTCGCGATTTCCTCGCGACGCACGAAGATCAGATGAGCGGCGCGTACAAGGGTCAGGGTCTCGAGCTAGCGGACAATCACGCGGACGTCCCAGTCGTGGAGGTGAGCGAACGCTCCGCACTGTCGCCGAAGGACGTCCACGCGATGATCCAAGTACTGCCGAATTCCGAAGAGGCGGACGAGAGGATCGTGAGGCGGTCGAAGCGACGGATAAACGACAAGCGGACCTTTTGGTGCGAGGAGTGCGACACCGTCTGCACCAACGCCGACGGATGCACGTCTCACAACGTGCGCGCGATCGCCGATCAACCGGTACCTTCGCGCGCTATCGCCACTCTGCCCGGATCGTACCTCTCGCTGAACAAGTTGGCAGCGTTCGCCGCGATTCCCGGGGGACCGAAATACGGTGTGTTCGCCAAGCGCAACATCCGCAGACGCACGCAGTTCGGTCCGATCGAGGGTATCTTGTGCGCCTACGACGGCGCGTACTTTCGCAACGTGCTGCCGCTGCTGTACGAGACCGACGCTGGAGTGTTGCTGAAAGTCGACGTGTCGAACGAGAACACGTCGAATTGGATGCGCTTCGTGAGACCGGCCGCGTCGTATAAGGAGCAAAACCTGGTGATCTGCCAGCAGAACGAGGGAATCATCTTTCTCACCACGCGAAACATCTCGGCGAAGGAGGAGCTGAAAGCTGGTCCCAGCGCCGAGTACGCCGCGCGGAGGAATCTCGTCGCGCTCGAGCCGGACGCGAAGGATATGAAAGAATTGGACAACGACTTGAACGCCTGGCCTTGCTTCGAGTGCAATCAGCGTTTCCTTACCTCGGAGAACCTGCAGAAACACTTGAACGTCCACGACAGTCCGCGGAGCGACGCGAAGTCGCGAAACAAGCGCAAGAAGATTCACATCGGCTCGAGCAAGTTCTTCAAGATCGTGGACGGCCAAACTCTCCTGTACGCGTGTCCGCACTGTCCGAAAGTGTTTCCGCGCAGCTACAGCTTGAAACGCCACTTGCTGATACATCCCGGTGCGAAAGCGCCGCGCTACGAGTGCCCGACTTGCGGCGATAACTTCCTGCACCCGTACAATCGAAACCGCCACGTCAAGTTGTTCCACGGCGCGAATccgaaggagaaggagaactCGAAGCGCGGCACGTCGGAGTGGAAGTGCATGACCTGCATGGTGGTCTTCACGAAGGCGTCTCTGCTCGATCTGCACACGCTCGTTCACGCCGACGACAACGTGAAGATCGAGAATCAGTCGACCAACTGTCCCCAGTGCGGAATGAAATTTCACAAGCTGAGCGATCTGATCGGTCACGTCTCGCAGCACGGGAGGTTGCAGCTGCCGAAATCCGCGAAGCTGAGTCCCCTGGCGGCGTACAAGTGCGCTCTGTGCTACAAACGCTTCGCGACCAAGGTGCGACTGCAGCAGCACTGTTTGGTCCACGGCGCGGAGGAGCAGAAACCGCTGCCCTGCAACGTCTGCTTCAAGCGGTTCATGAACAACTCCGCCTTGTCCTGTCATCTGAAGACTCACCGAGAGGACAAACACATATTCGAATGCCCCATGTGCCGGCAGCTGTTCGATCAGGTTCTCATGTTGAAAGATCACATCGAGACGCATCGCAACGAGGACGAGACCTTCAGCTGTCCCTTCTGCCCGCGAAATTTCGCCAAGTACTCGGTGATCCGTAAACATATCAGGGCGCATCACTGCGAGCGAAAGCACAAGTGTCAGTTTTGCGCGAAGCGTTTTCCCACGGTGGACAAGTTGAGGATGCACTTGTTGCGTCACTCGGATCACAGGGAGTTTCACTGCGCGAATTGCGAGAAGCAGTTCAAGAGGAAGGACAAGCTCAAGGAGCACATGACCAGGATGCATAACGAGGAGAAGACGAATCAGGAGCAAGGCTCGCAGGGCAATCAGTCCAAGAAGTTCGTGCCGAAGGTCAATCCGACGGATTACAATCGCTTCGTCTACAAGTGCCACCAATGTCTCGTCGGCTTCAAGCGACGGGGGATGCTGGTGAATCATCTCGCCAAGAGACATCCGGACGTCCCGCCAGAATCCGTTCCCGAGTTGAACTTGCCGATTCTACGGCAGACGAGGGACTATTATTGCCAGTATTGCGACAAGGTTTATAAAAGTAGCAGCAAGAGGAAGGCCCACATCGTAAAAAATCATCCCGGCGCCGCGTTGCCGCCGAGTAATCGACACAAGGAAACGGACGTTTCCGGTCTACCCAATCCGACGTTCAGTCAAACCGTGGGCAGCGTAACTACCACGCCGCAGGGCTGCCAGTGGTGTCACAAGCAATACGCCAGCAAGGCGAAGCTGCTGCAGCATCAGCGCAAGAAACACCCGACGCTGATGGAGCCCGCCGATCAGATACCGCGCTCGCGCAATCGTCCGTCCCAGAACCAGAATCTACCGCCTGTAATCGGCGAAGATACGTTCCTCATGTCCGACTATATCCAGGCGTGCGAGCTGAGCGCCGAATTTCTCAAGCCGAAGATCATCAAGATATCGGACGACGTCGATCTGATAGGTAACGGACTGGACGCGATGGGCCAGCAGTTTGTACGGATGCGCGATATACGCTGA
- Protein Sequence
- MEQRGPPEGAPVDPPEMPAVDKAADVSDGWPTCEPPRKMNNKLLFLTVEYVEDQSRDYARVFPPYEQVSFSPRANSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPTSPFHNSVVILQGPSSPLIAQPEPSARTDVNYATQLADRGVTEAAPRAESSPGFVVAGNEEELDSSVGGELILMQGSTPELENSSAAPLMLTGMPSSDFALTRDFLATHEDQMSGAYKGQGLELADNHADVPVVEVSERSALSPKDVHAMIQVLPNSEEADERIVRRSKRRINDKRTFWCEECDTVCTNADGCTSHNVRAIADQPVPSRAIATLPGSYLSLNKLAAFAAIPGGPKYGVFAKRNIRRRTQFGPIEGILCAYDGAYFRNVLPLLYETDAGVLLKVDVSNENTSNWMRFVRPAASYKEQNLVICQQNEGIIFLTTRNISAKEELKAGPSAEYAARRNLVALEPDAKDMKELDNDLNAWPCFECNQRFLTSENLQKHLNVHDSPRSDAKSRNKRKKIHIGSSKFFKIVDGQTLLYACPHCPKVFPRSYSLKRHLLIHPGAKAPRYECPTCGDNFLHPYNRNRHVKLFHGANPKEKENSKRGTSEWKCMTCMVVFTKASLLDLHTLVHADDNVKIENQSTNCPQCGMKFHKLSDLIGHVSQHGRLQLPKSAKLSPLAAYKCALCYKRFATKVRLQQHCLVHGAEEQKPLPCNVCFKRFMNNSALSCHLKTHREDKHIFECPMCRQLFDQVLMLKDHIETHRNEDETFSCPFCPRNFAKYSVIRKHIRAHHCERKHKCQFCAKRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHNEEKTNQEQGSQGNQSKKFVPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKETDVSGLPNPTFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHPTLMEPADQIPRSRNRPSQNQNLPPVIGEDTFLMSDYIQACELSAEFLKPKIIKISDDVDLIGNGLDAMGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -