Xcam018325.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783199.1:6029914-6033631[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9 7.3e+02 1.5 1.0 2 23 389 410 388 410 0.95 2 21 0.059 4.8 8.3 1.7 1 20 419 438 419 441 0.94 3 21 0.058 4.7 8.4 1.9 1 22 448 469 448 472 0.90 4 21 0.84 68 4.7 0.2 2 23 498 519 497 519 0.89 5 21 0.062 5 8.3 1.8 1 23 527 550 527 550 0.91 6 21 0.00032 0.026 15.5 0.9 1 23 556 580 556 580 0.92 7 21 0.23 19 6.5 0.3 2 23 614 635 613 635 0.94 8 21 0.22 17 6.6 0.5 2 23 644 666 643 666 0.93 9 21 0.00093 0.076 14.0 2.2 1 22 672 693 672 696 0.91 10 21 0.00036 0.029 15.3 6.5 1 23 780 802 780 802 0.98 11 21 0.004 0.33 12.0 0.2 1 23 809 832 809 832 0.95 12 21 9e-05 0.0073 17.2 1.6 1 23 838 860 838 860 0.97 13 21 0.0008 0.065 14.2 2.1 1 23 866 888 866 888 0.97 14 21 2.5e-05 0.002 19.0 0.8 1 23 894 916 894 916 0.97 15 21 0.063 5.1 8.2 0.4 1 23 929 952 929 952 0.96 16 21 0.00017 0.014 16.3 4.0 1 23 968 991 968 991 0.96 17 21 0.014 1.2 10.3 1.5 1 23 999 1022 999 1022 0.96 18 21 0.00025 0.02 15.8 2.3 1 23 1028 1050 1028 1050 0.97 19 21 0.008 0.65 11.1 5.0 1 23 1056 1078 1056 1078 0.98 20 21 0.0005 0.041 14.9 3.1 1 23 1084 1107 1084 1107 0.98 21 21 0.09 7.3 7.8 5.4 1 23 1113 1135 1113 1135 0.97
Sequence Information
- Coding Sequence
- ATGAAGACATTCATGCTAAAGGTGGAGAATGTGAACATCGCATTGACAACGACCGATACTTTTAAAGTGCTCCAAATGAAACTGAAAGAATATGGGATTTATCTTGAATTAAAGTCGATGCTGTTCAAAGGAAAAGCCATCACTGAATCTTCTATTGTCTCTGAATGCCTAAATTTTGACAATAAAGGCAACGAGGAAGAATCAATAGAGTTTGTCTTGCCAGATTTGCCAGAATCGAGTAATACTATTGGTGGAGATATTGGGAAATCCAAATACTTATGTCGTCTATGTGGCTCAAAGAGTGATGATGCTATTTATATCTTTCAAAAGACGCGTGACATTGCTGAGAAAATAGAAAAATTATTACCAATATCCCCAatcTCCCAGACTGACGGACTATCGAAATACATATGCACGGATTGTTGTCAAAAAATAAACTTCATACACGACTTTGTTCAGCTTTGCGTAGAAAATGAGAGGAAGCTTTTCAACTATGTAGATTCTTCGGATAATTTATCACTGAATACAAGTAGCCTCAGAGTTTTGGAAGTCAAAGAAAATTCTCTCACCCCTTATTGTCGTACGAAGAAATATAAATGCCCGAATTGCAAAATAAACTTAACAATTTTAAAGAACGCTCAACCAGAAAGTTTCGATAGCGATAATCACCTTTCTTTGTCTTTGTTCGTTAATTCAACGGGGTCTGAATTAAATTTCCAAAAGGATAGGGCTGTGAACGAGGATACGGCAGAAGCTGTTGTAAATCGTAGAACGAGTTCCAGGATAAAGAGAAATTTAAGGTCGTACGCGGTTGTCGCGAATGAAAATGGTTCTGCTTCTACGATTTTTACCAGAAGACAGGCTCAAAATAATTGTAACGCGTCGTTAAATCATAGTACCACTCAGAGTCCTACTGCAAATTCAGATATTGTTGAATTTAAGAACTGGCAAAATTCCAAAGAGAAAAGAACCAAACTGAGAGACATTAGAAAGCGGACGTCAAATTCGGATGGTGCTAAAGTAGTGAGGTCGTCTAAGAGGTGCAGAATAACGTTAAGTAATTCGGATGATGTTACACGTGATACAAAAGCCCTGAACGATGAAGATACCAATGAACTTGAAGAAGAGAGCGGTAACGACGGTACGAAGCAATTCTCGGGGAAAAAATGCGACGCATGTAACTTGGATTTCTATTCCGAAGATAGATATATATTTCATATGAAGCGCCACGAAACGAAAGAATACATGAAGGATTTTATATGCGCTACATGCAACGAAGAATTCATTAACGAGGACGCACTGTGGAAGCATCATTACTGCCACCGTGTTGATGAGAATCGTCACCGTTGCGCGACGTGCGAGGAGACCTTCGCGGAAGAGTCAGAATTGAGATACCACGTACACAAACAAAATCACGAAGAGGATGGTGAAGCAGCCTCTGCCAATATTACCGAGGAATTATTCGATGCTAGTAAAAAATGTACGAAATTGACCTGCGAAGGGTGCGGGGCACGTTTCGTCTTGCGAGAGCGGTACGAGTTTCACATGGAGAGACACAAATTAGGAAACATCGAAACCTTCTCTTGTCTGGTCTGCGACAAGCGATTCAAAAGTGAGAATATTTTATGGGACCATCATCAGTATCAGCACCGAACGGCCGAAAGATTTGCGTGTCTCACCTGTGAAAAAACGTTCGTTAAACGCGCAAACTTGAATTACCACCTAAAGACATTCGGCCACAAGGGTGGAAAGCTAGTCGTCAGCTCGGATGAGAGTCGGGAAGCCGATTCTAGCGGTAACGTCAAATCGCCGGACGTCGGCAAGCCCAGACCGAAGATAACGTGCTCCGAATGCGGTGCTCGGTTCGTGTTGCAAGAAAGATACGAATTTCACATGAACAGGCACAGGACAGGAAAGATGGACGCATGCGTGTGCGAGTTGTGTGGCAGGGAATCGACGAACGAAAATGTTCTGTGGGATCACTATCAGTACATGCACAAGAGGACGAAACGCTACGTCTGCACGACGTGCGGGAAGCTGTTTCACAAGCAGTCCATGTTGAGCAGACACCAAGTCAAGTACGGGCACAAGGGAACGAAAGAGGTGGACATAGTGACCGACGACAATGCTGTCACCGTCGACAGTGCCGCGTTCAAGAAGGTAATAGCGGAGGAGGTGGTAGAAATGAAGTCCGTCAATTGCGTCCTCTGCGGGGAGATCGTATGGGGCGTCGATCCAAACCTGATAAACGACGCGGTGACCTGTCGAAATTGCGAGAGGCCGGGCCTCTCCTTGCAGGTTGACTCCGACGGAGCCAAGGTCATCACGCGACGTCAGTACCACTGCAACATGTGCAACAAGCATTTCACCACGAAGGACAGATTGGAGTACCACATAATGCGACATTCGGAGAACATGGACGAGTTCGTCTGCAGCACCTGCGGCAAGGAGCTCAGCACCGAGCAAGCGCTGTTCGAGCATTACTTGTACGTCCACAAGGGCGCTCGTCCGCACGTGTGCGAATTGTGCGGCAAGTCGTATCAGTTCAAGGCGCGACTCAAGGAACACATGAGGATACACAGCGGGGAGCGGCCGTTTGCCTGCGAGATATGCGGGCAACGGTGCATGACGAACAACGCGCTCCGATCTCACAAGAAGACACATATCACGGAGAAGAGGTTCCCCTGTCAGATCTGCAAGAAGGCGTTTCGCAAAAGGCAGGACCTGAACGAGCACTTGGAGAGGCATTGGAAGAACGACAAGACCATGATGCTGCCGCAGGTCTTCAGCTGCGCGATCTGCCTGGAGATGTTCCCCACGTTTCGCATCCTGAAGAAGCACATGAAGGAGGAGCACAGGGTCGAGAGTCAGGACCCGATACTGACGGAATTGCAGCCGTGGTTCGAGTGCGAGGACTGCCACGAGAAATTCAAGCATCAGATGTCTTTGAAGGTCCACAGGGAGAGAATCCACGAGGGCAAGATGAAGCCTGTGTACCACTGCGATCTGTGCGACATAACGTACAAGAACGCGAGGGTATTATCGAATCACGTTAAGAACAAGCACGAGGGAGGTAAACGATATAAGTGCGCCCAGTGCGGAAAGGAGTACAATCAGTCGACGTCGTTGCACAATCATATCTTCCTTCATACCGGCGAGAAGCCGTTCAGTTGCGAGCATTGCGAAATGACGTTCAGGACGAAGGAGTCGCGGGATTATCACCAGCGAAAGCACACGGGCGAGCGTCCCTATAAATGTCCGCATTGCGAGAAAGCGTTCGCCACAACGACTCAGCGGCGCGAACATCGTAAACGCGAACACGACGAGGGTAATAATCATCATTGTCCCGAATGCGGGAAAGTGTGCTTCGGCGAGCACGGAGTGAGGAGTCATCTGAACACTCACATGGCTGACAAACAAAAGGCCGCTTAA
- Protein Sequence
- MKTFMLKVENVNIALTTTDTFKVLQMKLKEYGIYLELKSMLFKGKAITESSIVSECLNFDNKGNEEESIEFVLPDLPESSNTIGGDIGKSKYLCRLCGSKSDDAIYIFQKTRDIAEKIEKLLPISPISQTDGLSKYICTDCCQKINFIHDFVQLCVENERKLFNYVDSSDNLSLNTSSLRVLEVKENSLTPYCRTKKYKCPNCKINLTILKNAQPESFDSDNHLSLSLFVNSTGSELNFQKDRAVNEDTAEAVVNRRTSSRIKRNLRSYAVVANENGSASTIFTRRQAQNNCNASLNHSTTQSPTANSDIVEFKNWQNSKEKRTKLRDIRKRTSNSDGAKVVRSSKRCRITLSNSDDVTRDTKALNDEDTNELEEESGNDGTKQFSGKKCDACNLDFYSEDRYIFHMKRHETKEYMKDFICATCNEEFINEDALWKHHYCHRVDENRHRCATCEETFAEESELRYHVHKQNHEEDGEAASANITEELFDASKKCTKLTCEGCGARFVLRERYEFHMERHKLGNIETFSCLVCDKRFKSENILWDHHQYQHRTAERFACLTCEKTFVKRANLNYHLKTFGHKGGKLVVSSDESREADSSGNVKSPDVGKPRPKITCSECGARFVLQERYEFHMNRHRTGKMDACVCELCGRESTNENVLWDHYQYMHKRTKRYVCTTCGKLFHKQSMLSRHQVKYGHKGTKEVDIVTDDNAVTVDSAAFKKVIAEEVVEMKSVNCVLCGEIVWGVDPNLINDAVTCRNCERPGLSLQVDSDGAKVITRRQYHCNMCNKHFTTKDRLEYHIMRHSENMDEFVCSTCGKELSTEQALFEHYLYVHKGARPHVCELCGKSYQFKARLKEHMRIHSGERPFACEICGQRCMTNNALRSHKKTHITEKRFPCQICKKAFRKRQDLNEHLERHWKNDKTMMLPQVFSCAICLEMFPTFRILKKHMKEEHRVESQDPILTELQPWFECEDCHEKFKHQMSLKVHRERIHEGKMKPVYHCDLCDITYKNARVLSNHVKNKHEGGKRYKCAQCGKEYNQSTSLHNHIFLHTGEKPFSCEHCEMTFRTKESRDYHQRKHTGERPYKCPHCEKAFATTTQRREHRKREHDEGNNHHCPECGKVCFGEHGVRSHLNTHMADKQKAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -