Xcam012670.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783196.1:9206360-9209206[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0008 0.065 14.2 1.8 2 20 148 166 147 169 0.94 2 13 0.00099 0.081 13.9 0.9 1 23 175 198 175 198 0.93 3 13 6.5e-06 0.00052 20.8 0.8 1 23 204 226 204 226 0.98 4 13 1.5e-05 0.0012 19.7 1.4 1 23 379 401 379 401 0.97 5 13 0.0049 0.4 11.7 0.3 2 21 411 430 410 431 0.93 6 13 0.00045 0.036 15.0 2.6 1 20 453 472 453 475 0.92 7 13 0.0098 0.79 10.8 0.7 1 23 480 503 480 503 0.96 8 13 2.2e-06 0.00018 22.3 0.3 1 23 509 531 509 531 0.98 9 13 0.0031 0.25 12.4 6.3 1 23 538 560 538 560 0.98 10 13 0.00053 0.042 14.8 0.4 3 23 568 588 566 588 0.97 11 13 0.0006 0.049 14.6 0.2 1 23 594 617 594 617 0.96 12 13 0.96 77 4.5 0.1 1 23 631 653 631 653 0.92 13 13 0.0038 0.31 12.1 0.0 3 23 927 947 926 947 0.97
Sequence Information
- Coding Sequence
- ATGGAGACGCACGAGAACGAACAGTACGTCAACTTTCCACTGTCCACCGTCCACGAAGCGATGCAGGATACTATAATATCGCACGAGGAAATATGCGAACCCGTCGACGAATGCGTTCTCCAGGATGGTTTGACCGACGTATCCGTCAGCGATGTAAATCCTGGCATCACCGAGGCGCAGGTTGCCGTCGAAATCTTGACCGAGCAGtcggacgaggacgacgagaagtCCATGGCTTATCCTGCCATTTTCATCAAGCAGGAGGAACAGCAGCAGTACACTTCCGGGGATGACGAGACCATGGCCGTGGAAGCTCTTCGTCAGTTAGGTGGAATGTATCCCTGCTTCGGCGCGAAAAAAATCAGTTGCAGTAATTGCGCGAGCCCCATCAGCCAAGCCGACATGGCCAAGCATCACCTTACTTGTACCCCTCTTAAATTATCCTGTACGACTTGCGGAGAGAAATTcgagagaaaaatggatttgaataATCACATGGTTTGTCATCAAGTAAATCGTCCCCACGCTTGTAGAACTTGCGGAAATCTCTTTCGTTCGAAAGCCAACCTGCAATCGCACATGGCGCAGGTGCACCAGGTCGAGAGGCCTCACAAATGTAACGTCTGCGGGGCAGACTTTCAAAGGCCTTCGAGTTTGTCGAATCATATGAAAATACACACATACGTAGCTGGTAGAGCGATCATGCCTTCTCAAAGTACCAACGCGGTACAGAACGTAGACTCCTTCAGAAAATGGCCCGAGAATAACGTCTCCGAGGCGCAGACGAACGCGTCTTCCTCTTCGGTACAAACCATCCCAAATTACGACGTTTCCCAAGTTAATTGGTCGGTGCcatcttataattttcataacgaTCAATCGAACGTTGCCAGTCTCGCGAATCATCAAGAGAAAATGGATGCTTTGCCAGAATTTGCGGTAATGTCCAATGGCGAAGTTACGCAGTTTGAATACACTCAACAAAACGCGATGAATAATCAGATGAATCAACAATACAACATGGCGTTGAATACCTTCAACAATCACGAGTCGTTGGTAAAAGTCGAGTCGTTGCCTTACTCATCTGAAAATAGGAGAAATTATACCGAGGTTCCCGAGATAACTGAAAAAACGCATACGTGTACCCATTGCGGAGTTAGCTTCGCACGAGCGTCCGCCTTGGCTACTCACGAAAAGAGTCACGCTTCTAAAAACTGGGGTATGCCAATCGAATGCGAATATTGCGATAAACAATTTCAAGACGGAAATCATTTAGCAACGCATCAAACCACTTGCGCAAAGAAGATTATGCGGAATAATATAGAGCAGGGCGTGGCCAACAGCAAATGGGGCAAGCACGCTTGTTCCGAGTGCGGGAAGAAGTTCACGACTAAGCAGAAAATGTTTAGACATCAATGGATTCATAGGAAAAAGACCCACTCCTGCGAGGTGTGCGGATCTCAGTTCGAGAAGCAAAATCAGTTGGACGAACACAGATTAACCGCGCATCCAGGTGATTCGCCGTTTACCTGCAGCGAATGCGGGAAAAGCTTCGTGTCCAGGCAAGGACTTTGGGAACACGGCAGGACGCACGCCGGGAGTCCGGCGCACTTTCACTGCGACACCTGTTCCAAAACATTTTCCTCCAGACAAGGATATCTGATACATCATCGAACGCACACCGGGGAACGGCCGTACGGATGTAAATTTTGTTGGAAAGCTTTCCGTGACGGGGGCACCCTCAGGAAGCACGAACGCATTCATACCGGAGAAAGACCGCACGTTTGTCCGTTATGCTCGAGAGCGTTCAACCAGAAGGTTGTACTCCGAGAACACGTGCGATGGGTTCACGCGGCGGGAAAGAACGAGACAGAAGTAACCGGCCCACCATTTCCGTGTCCTCTGTGCGGCGCGCTCAATCAAGATCGAGATGAATTATGCGCTCACATCGTCAAGCATTCAGATCAAATGATTGCCGAGGCCAAAGCCAAATCGAATAACAACGCGCCAAAGCAGAAGGccacgaagaagaagacgaaaacCTCCGCGGCCTCGAGCTCGCGGACCAAGCAGAATTCAATTTCAAGAACGGAAGAAACCGAAGCTTTACTTTCCATCACCGAAGACACGAAGACCTTTGACGACCAGCAAAGGATGCCCGGGAAACAACACGAAACAACGCTCCTTATCACGGCGGACAAATGTAACGAGACTCTGCGCCTGATCGCCGAAGGCAAGCATAATAATTTACGTTTGACCGTCGAAGATAAGCAGACCGAGGCCATTCAAACTTCTCAGAGGAATCATAATCGCCGAGCGTCTCACGATTCTATCGCTATTGATGAACAAAGCGTCGGTCATGCGGCTGTCGCGGAACAAGAAAATTCTATGCATTCGATTCCTTTGGCAAGGCAGAACGAGATCAATGCCCTTCACGTAATTTCGGCTTCCAAGCATACGGAAGCGTTGCATTTGATTTCCACGAATAAGCAAGGCAATACTTTGCACATGATATCCAAGCAAAACGAATCCTTGCCCGTTTTGGCTATACCGAATCCACAAAATCACGACAACTTCTCCAGCCAAGTTATTCGTATGAATAGCACCGACGTGCCGATGAATATGGTCACGCATCATTCGTCCAGGCAAAGTCAAAATTCAAAGAACCAGACTTCGGAGATTCAAGAAGCGTCGATCAGGGATGGAACGTCGCAATCTCTTATAATAGAAGACGTTCATTTTCACGCACAAGAGAGTGACGATGACGGAGAAGTTGCCTGTGGTATTTGCGGGGAAGATTTCAATGATAAAAATGTACTGATGGAACACGTCAAGGTCCACATATAA
- Protein Sequence
- METHENEQYVNFPLSTVHEAMQDTIISHEEICEPVDECVLQDGLTDVSVSDVNPGITEAQVAVEILTEQSDEDDEKSMAYPAIFIKQEEQQQYTSGDDETMAVEALRQLGGMYPCFGAKKISCSNCASPISQADMAKHHLTCTPLKLSCTTCGEKFERKMDLNNHMVCHQVNRPHACRTCGNLFRSKANLQSHMAQVHQVERPHKCNVCGADFQRPSSLSNHMKIHTYVAGRAIMPSQSTNAVQNVDSFRKWPENNVSEAQTNASSSSVQTIPNYDVSQVNWSVPSYNFHNDQSNVASLANHQEKMDALPEFAVMSNGEVTQFEYTQQNAMNNQMNQQYNMALNTFNNHESLVKVESLPYSSENRRNYTEVPEITEKTHTCTHCGVSFARASALATHEKSHASKNWGMPIECEYCDKQFQDGNHLATHQTTCAKKIMRNNIEQGVANSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLTAHPGDSPFTCSECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKSNNNAPKQKATKKKTKTSAASSSRTKQNSISRTEETEALLSITEDTKTFDDQQRMPGKQHETTLLITADKCNETLRLIAEGKHNNLRLTVEDKQTEAIQTSQRNHNRRASHDSIAIDEQSVGHAAVAEQENSMHSIPLARQNEINALHVISASKHTEALHLISTNKQGNTLHMISKQNESLPVLAIPNPQNHDNFSSQVIRMNSTDVPMNMVTHHSSRQSQNSKNQTSEIQEASIRDGTSQSLIIEDVHFHAQESDDDGEVACGICGEDFNDKNVLMEHVKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -