Xcam012302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xiphydria camelus
Gene Symbol
-
Assembly
GCA_963678675.1
Location
OY783196.1:2079829-2082783[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0034 0.28 12.2 1.8 2 23 330 352 330 352 0.92
2 11 0.0004 0.033 15.1 0.8 1 23 361 384 361 384 0.95
3 11 0.0006 0.049 14.6 2.4 1 23 434 456 434 456 0.99
4 11 3.2e-08 2.6e-06 28.1 1.1 2 23 497 518 496 518 0.97
5 11 9.4e-05 0.0076 17.1 1.2 1 23 523 546 523 546 0.95
6 11 2.9e-05 0.0023 18.7 0.2 1 23 588 610 588 610 0.97
7 11 1.2e-06 9.6e-05 23.1 0.9 1 23 620 642 620 642 0.96
8 11 3.3e-06 0.00027 21.7 1.2 1 23 648 670 648 670 0.99
9 11 1.7e-05 0.0014 19.5 0.2 1 23 676 698 676 698 0.98
10 11 0.0029 0.24 12.4 4.2 1 23 704 726 704 726 0.98
11 11 0.00063 0.051 14.5 0.3 1 21 732 752 732 753 0.94

Sequence Information

Coding Sequence
ATGGAAGTGGAGAACAGTGGGGAAGCAATTCAAAATCTCGAATCGTCGCTCGACAATTCGGGAAGAGAATGTCGACTTTGTATGAAGAGGTGGATTTACTCCGAATTATGGGATCTGTTTCGGGATGGGGAAGAAACTGCACGAAAAATAATGGCGTTAGCTGCCGTCCAGATACAAGAAGGAGATGGCTTACCAACCACGATTTGCTTTTCCTGCCACAAGCTTTTGCTCCTGTCCTACGACTTCAAGTGTCAAGTGGAGAAGTCTGATACAACGTTACGTCACTTTCTCATGTTCAAAACGTCTGTGAAAGATGACATCTCGAACGCTTCGTTGGCACAATCGGTCGACGCGGTCATTACAGAAGCGATAGCGGATGAAATGAGTCACGAACAGATTTCCGGTGATCTGAAAGAATGCATCGATGTCCCTAGCATAGCTATAGACGAGCCTAATAATCCCGTCATCCAAACCATCGAGCATTTGACCGAGCACAATTTCACCGGTGATCAAGATGCGATTATATTCGAGGTGGCGGACGATCGCAAGCAGGGACAATATCACGAAAAGGAGATCGAGTCGTGTACACTGAAGAATGAGCAAAACTTTGATTGCATGGGAGCAAAATCAGAGATCGAGACTCCTCGAGAAGTGGGTGACGCGGATTGTTTGTCGAACGGACCAAGCCAATTGTCCGAGTCCAATTTCGAGCTGAAACTGGTAAAATGCGAAGAATCATCCCAGGAAGTTGAATCGGACGTCTTGGAAGACGAGGAAAGGTCGTACGACGGGGAGACCATGTTCGAAGAGTCCGCTGTTAAAATCGAGACGAGAAATTATTCGTGCACGGAAACCCGCGCTAGCCTTCAGAGGACCACGAGGAACGTTATGCGAAGTAGGTCAGCCGGTCAGGGGACGAAAGATAACGCAGATAGCGACGACGAGAGGTTGTTGATACGCGCAACGCGGAGAAAACCGCGGAGAGAGAGATGTCCGCATTGCCTGAAGACGACATTTTCGACGAAATCGGCCCTTCGAAAACACATAGCCGCGCACAAACCCAAAACGCTTAAACTTCGTTACGTTTGTTACGTATGCGACAAACAGTTCATCAATGTCACCAAGCTGAAAAATCACATAACGAATAGCCACGATTCTCACATGAGCGACGAAAAGACTTCGGACGAGGGCACCGCGATGAAATCGTCGCAATCGGATCGCGACGGAGAGAACTGGGAACGGGACGATACCGGAACGACTAAGGTCTCCTCTCCGAgtatggagaaaaaaaattacaaatatacGTGCAACGTGTGCGCAAGGCAATTCACCTATCAAAAGTCCTTCATGACCCACGCCAAGACACATTCGGGGCGCAAGTCCGTAATACCGCACGATAATTCCGAACGGTCGGAGGACGCGGAAAATCACGACGGCCCCGCCGCGGTGAACGaatccgacgacgacgacatgcCACTGGAAGGCTTGCAATGCACGCAGTGCGGTAAAGTTTTTGCGACGAAGCGGAACCTCAAGAGGCATATATTGACTCACAAGGGACTCAAGTTTAACTGCTCCACCTGTGGAAAGGAATTTTCCAGGGTAGACAAACTGAAGGAGCACGAGCAATCGAAACACAAGGATGAAATATTTGGTAGATCGGACGACGACTAcaataacgacgacgacgactacaCGGATGACGAGCATAAAGCAAACGATGCGTCGGAAAGCAGAAAGAGGGAAAAAAATAACAGACCTCATCGATGTGCCTTATGTCCAAAGGCGTTTGCCCAGGCGCAATCGTTGGCGAACCACATGGAACGGCACAAGCGAGTGAAGGACACCCAAAAGCGCTTCCTGTGCGAGGTGTGCAGCAAGTGTTTCGCCCAGAGCGGCTCGTTGGTGGCGCACATGCGCACCCATACGGGAGTTAAGCCGTACGTGTGCAACGTGTGCAGCAGGGCGTTCACAAAGAGTACATACTTGCAATTGCATCTGCGGACTCACAGCGGCGAGAAGCCGTACATCTGTCAGTATTGCAGTAGAGCGTTCGCCAGAGCCAATACGTTGGCTAGACATATAACCATGCACACCGGCGAGGCTAAGTATCACTGTCAAATATGCATGAAGTCGTTCAGACGATTGACGTCGCTCAACGAGCACACTTATACGCATACGGGGCAAAGGCCGTACGCGTGTAAGATCTGTACAAAGCGGTACAATAACGCGGGATCGCTCTACGCCCACACGAAGAAATGCAAGACTCAACAGTTGTCAGGTTCGACGGCGACGTACACCGTGTCGGTGGACAATGCGACGCATCAAAATGGTGCTCAAGTGCCGCAAATGCTGATCTATTCCCAAAGAAAATTAGTTGAGGATAATGCAAGCGTCCAAGTACATCCGTCACCTCAATTTATGATCGCGAATATACATAATCAGAAGCCATTGCCCACTAATGTCATTCAACCGTTCACCGTCGAAGACCCAAATGTTTACAATACCAAGCCATTTAAAAATCCTTACTATACGATTTACCCGAGCATGTAA
Protein Sequence
MEVENSGEAIQNLESSLDNSGRECRLCMKRWIYSELWDLFRDGEETARKIMALAAVQIQEGDGLPTTICFSCHKLLLLSYDFKCQVEKSDTTLRHFLMFKTSVKDDISNASLAQSVDAVITEAIADEMSHEQISGDLKECIDVPSIAIDEPNNPVIQTIEHLTEHNFTGDQDAIIFEVADDRKQGQYHEKEIESCTLKNEQNFDCMGAKSEIETPREVGDADCLSNGPSQLSESNFELKLVKCEESSQEVESDVLEDEERSYDGETMFEESAVKIETRNYSCTETRASLQRTTRNVMRSRSAGQGTKDNADSDDERLLIRATRRKPRRERCPHCLKTTFSTKSALRKHIAAHKPKTLKLRYVCYVCDKQFINVTKLKNHITNSHDSHMSDEKTSDEGTAMKSSQSDRDGENWERDDTGTTKVSSPSMEKKNYKYTCNVCARQFTYQKSFMTHAKTHSGRKSVIPHDNSERSEDAENHDGPAAVNESDDDDMPLEGLQCTQCGKVFATKRNLKRHILTHKGLKFNCSTCGKEFSRVDKLKEHEQSKHKDEIFGRSDDDYNNDDDDYTDDEHKANDASESRKREKNNRPHRCALCPKAFAQAQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKTQQLSGSTATYTVSVDNATHQNGAQVPQMLIYSQRKLVEDNASVQVHPSPQFMIANIHNQKPLPTNVIQPFTVEDPNVYNTKPFKNPYYTIYPSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-