Xcam015621.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xiphydria camelus
Gene Symbol
-
Assembly
GCA_963678675.1
Location
OY783197.1:21847259-21850613[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00037 0.03 15.3 0.3 1 23 116 138 116 138 0.98
2 19 0.0022 0.18 12.8 1.6 1 23 183 205 183 205 0.97
3 19 7.5e-06 0.00061 20.6 0.3 2 23 213 235 212 235 0.94
4 19 0.0026 0.21 12.6 2.8 1 23 243 265 243 265 0.94
5 19 8.3e-05 0.0067 17.3 0.7 1 23 269 291 269 291 0.98
6 19 0.00072 0.058 14.4 1.5 3 23 299 319 297 319 0.97
7 19 1.8e-05 0.0015 19.4 3.7 1 23 325 347 325 347 0.96
8 19 0.054 4.4 8.5 1.5 1 23 356 378 356 378 0.95
9 19 2.3 1.9e+02 3.3 0.2 2 23 385 405 384 405 0.91
10 19 0.0001 0.0082 17.0 0.4 1 23 411 433 411 433 0.97
11 19 0.00031 0.025 15.5 3.2 3 23 555 576 553 576 0.95
12 19 0.033 2.7 9.1 1.8 5 23 586 604 582 604 0.90
13 19 0.055 4.5 8.4 0.4 1 23 608 630 608 630 0.97
14 19 7.4e-05 0.006 17.5 1.0 2 23 637 658 636 658 0.97
15 19 8.2e-05 0.0066 17.3 2.1 1 23 664 686 664 686 0.98
16 19 3.9 3.2e+02 2.6 0.9 1 23 695 717 695 717 0.94
17 19 2.8 2.3e+02 3.0 0.3 2 23 724 744 723 744 0.84
18 19 3.2e-06 0.00026 21.7 0.9 1 23 750 772 750 772 0.97
19 19 2.9e-06 0.00024 21.9 1.2 1 23 778 800 778 800 0.99

Sequence Information

Coding Sequence
ATGAATTATTCCAAGATCCTGTTTGCCAAAGTCAAAATAGCGATGCCGGTCATTCAGGAGACAGAGATACCGGAAGCCGAGGAGCAGCAGCATCATGAAGGACAGCCGTACTATTTCGTCGCTTGCCCCGCGGCGGATAAGTACAGTTATAATTACGAGATGGCGACGACTCCATACTTCGAACATGTTGATGTCCTTAATTTGCAGACGTCTACTGGCAATTCagtgagaaaaaatattttgaacgcCGATGCAAAAGCGGCCCCAAATAATCCGAAGCCTTCCGATTCGAAAGATTCGCAAATAATGAAGGAAAGTCTTCCTCGACACGGTTCCAAGAATAACTATGCTTGTGACATATGTTTCGAAGGCTTCATATCTCGCAAAAAATTAGCAGTGCATAGGAAAACGCACGATCCTAAGAAGACGGATAAGGAGTCGAATAATTCGTGCGACGAAGCATTGACTTCCGGTAGCCTAACCGTGATACAGAAACAAATGCAGGACTTACAGAGGCTGAAAAAGAGATCTGAACCTCCATTGATCTTCGCATGTAAAGATTGCGAAATGAAGTTCCCCACGAAAAATTCCTACAGTGAACATAGATCGAAACACAGGATCGAGAGGGAAAGAACCACCTGCAAATACTGCGATAAACGCTTTGAACAGCCGGCGGAATTGCAGGAGCATTTGAAGGCCCTACACTCCCAGCACGACGGTCGTCCTTACAAGTGTCCAGTATGCAACAAAGGCTACAAGACGAAAAGCCTCATGAGATGTCACGGAAAGATCCACGATAAGCGATTCATCTGTAGCGTCTGCGGCTTGATGCTGGCGATGAAAGAGCATTTGAAAGAGCACATGAGAAGGCATACCAAGGATTACTCCGTTCATTGCGAGGTATGTCGAAAAGGCTTCTACGACAATCGTAGTATGCAACTGCACATGTTGACGCATACGGGCGAGAAGAACCACGCCTGCCACATCTGTAAGACCTCGTACAGTACCGAAAGCTACCTCAAGATTCACATGAAAATACATGAAAGTCCCGAAATGAGGAAGAAGTACAAGTGCGATCTGTGTGATTTCGAGACCTTCTATAAGAACAACATCAGGAAACATCTATCGGCTCACGCCGGTGACAATCGGGTGCAGTGTGAAGTCTGCGCCAAGCCTATCGGCAAGCATTACATTAACGTTCATATGAGGATCCATACTGGCGAAAAGCCGCACATCTGTGAAGTATGCGGGAAAGCCTTCAGCGCGGGCAAATATCTCGTCACCCACTTACGTACTCATACGGGGGAGAGACCCTTCCAATGTCAATTGTGCGAGAAGAGATGTGGCCCGGGCATCGTGGAACGTCTTTTCAAGAAAGAGCCCAACGATCTTGTGGAAAACAATATCTTCATTAACTTTATAAGCTTGGACTGTTCGGAAGAGAACTTCGTAAAAGAGAGCGAGATTAAAGTGGAACCGAATGAAGAGAGGAAAGTGGACAGGGAATGTCAATCTCAGGTCAATCTGGATTCGGAGAAATCGATTGCTCCCGGCTCCACTACTCAGTCCGTCTATGAATGCAACGTGTATAATAaaaagatgaagaagaaaacgCAGTTTCTTAAGCACAGACATATCTTTGAAAGGAATTCTAGCAGTCATTGCACGGAGTGCGACGAACACTTTACCGACGAGAAGAAGTTGCAGAAGCATATAATAAAGGTGCATCAAAAGGAGAAGCCTTTTCTGTGTATACAGTGCGGCAAGGGTTTCAAGACCGAACGATTCCTCAAAACTCATTCAAAGCAGCACAACAAGCATTTCACTTGCGATATCTGCGGTATATCCAAAGTCTCTGGTTACGACCTTCGTCTTCACAAGAAGAAACACAATCAGGAGTATGTGACTTACTGCGAGACTTGCAATAAGGGTTTTTACACCAAACAGTCTCTGGAGCAACACGTTCTAACGCATACTGGTGAGAAGCCCTTCAGCTGCAGAATTTGCAACACATCATATTCCAGTGTGTCTTATCTAAACACGCATTTAAAGAAACACGAAAGTCCTGAGACGAGAAAGAAATATAATTGCGCTTTTTGTAGCTACGAGACATTGTATAAGGCCAACATTAAACTGCATTTACGTTCTCACGTTGGTGGTAATCAGGTGAAGTGCAAAGTCTGTGCCAAATTTATTGGACGGAATTATATTAAGGTTCACATGAGGATCCACACCGGAGAAAAGCCACACATTTGCGAAGTATGCGGAAAAGCCTTCAGCGCGAGTACGTATCTCACTACACATCTGCGCACTCACACGGGAGAGAGGCCCTTCCAATGTCAGTTGTGCGAAAAGAAGTTCACCCAGGCGACTCCATTGAAAGTGCATATGAAGACTCACTCTTCGAATATAATAAAACGTTCTTCACGAAAAAAATAG
Protein Sequence
MNYSKILFAKVKIAMPVIQETEIPEAEEQQHHEGQPYYFVACPAADKYSYNYEMATTPYFEHVDVLNLQTSTGNSVRKNILNADAKAAPNNPKPSDSKDSQIMKESLPRHGSKNNYACDICFEGFISRKKLAVHRKTHDPKKTDKESNNSCDEALTSGSLTVIQKQMQDLQRLKKRSEPPLIFACKDCEMKFPTKNSYSEHRSKHRIERERTTCKYCDKRFEQPAELQEHLKALHSQHDGRPYKCPVCNKGYKTKSLMRCHGKIHDKRFICSVCGLMLAMKEHLKEHMRRHTKDYSVHCEVCRKGFYDNRSMQLHMLTHTGEKNHACHICKTSYSTESYLKIHMKIHESPEMRKKYKCDLCDFETFYKNNIRKHLSAHAGDNRVQCEVCAKPIGKHYINVHMRIHTGEKPHICEVCGKAFSAGKYLVTHLRTHTGERPFQCQLCEKRCGPGIVERLFKKEPNDLVENNIFINFISLDCSEENFVKESEIKVEPNEERKVDRECQSQVNLDSEKSIAPGSTTQSVYECNVYNKKMKKKTQFLKHRHIFERNSSSHCTECDEHFTDEKKLQKHIIKVHQKEKPFLCIQCGKGFKTERFLKTHSKQHNKHFTCDICGISKVSGYDLRLHKKKHNQEYVTYCETCNKGFYTKQSLEQHVLTHTGEKPFSCRICNTSYSSVSYLNTHLKKHESPETRKKYNCAFCSYETLYKANIKLHLRSHVGGNQVKCKVCAKFIGRNYIKVHMRIHTGEKPHICEVCGKAFSASTYLTTHLRTHTGERPFQCQLCEKKFTQATPLKVHMKTHSSNIIKRSSRKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-