Xcam019113.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963678675.1
- Location
- OY783199.1:19314610-19319625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.012 0.96 10.5 0.1 1 20 51 70 51 72 0.94 2 13 8.6e-05 0.0069 17.3 2.0 1 23 148 171 148 171 0.96 3 13 3.6e-05 0.0029 18.4 2.4 2 23 178 200 177 200 0.96 4 13 0.00024 0.019 15.9 2.4 1 21 206 226 206 227 0.94 5 13 1.2e-08 9.8e-07 29.4 1.7 1 23 238 260 238 260 0.99 6 13 0.00056 0.045 14.7 2.1 2 23 270 291 269 291 0.97 7 13 0.015 1.2 10.2 0.6 2 23 298 319 297 319 0.97 8 13 1.9e-05 0.0015 19.3 2.5 1 23 325 347 325 347 0.99 9 13 7.5e-06 0.0006 20.6 1.8 1 23 353 375 353 375 0.94 10 13 1.5e-05 0.0012 19.6 1.0 1 23 381 404 381 404 0.96 11 13 4.2e-05 0.0034 18.2 0.3 1 23 410 432 410 432 0.98 12 13 5.3e-06 0.00043 21.1 6.4 1 23 438 460 438 460 0.99 13 13 7.7e-06 0.00063 20.6 2.1 2 23 467 489 466 489 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATTCTGTAATACTGGAGAATAACTCCGAAATTTCCCTGGATCCTTTAGACAGTAACACTGTATTACTTACAAGCGATGGAGACCCAAAAGATTTGAAAGATGTTCTCTCTCAAAATGGCCGCATAATTCAAATAGTTACCGATTACGAATGTGTGACGTGTCATCGTACTTTCCCAGCCGAAGAGATGTTGAAAGAGCACTTGGAAGTGTGCAGAGAGGAAGATGATAGCACTCACATCTTAGAGCTGGGAAGTTTTGGGAATTATGATTCCGATAATGATATCGACGATCCTAATTCTGAATTAATCGATGATGCTTCTAATGAATCGCAACAGTCAAAAAATAATAACGGGGCGGCAAGAATTAAGCCAGTGGGTAGCAATCAGTGTCATTGCTGTGCCGAGGATTTGGCTACTGCTCACAGTGGAGGTGATTTTAAATGTCAGAGTTGCGATCTTACTTTCAAGAAAGCGCATTCACTAGAAAGACATTACATCGTCATTCATTGGGAGGAACAACGTAGTACGTGCAAGGAATGTGGTAGCACTTTTCGCGATAAAAAGTCACTCGAAAAACATCGCTATACCACACACGCTACTCATAAAGTGTACAGATGCGAACCGTGTGATAAATATTTCTCTCGGAGTTACCACTTAAACCGTCATAAGATGCAATCTGGGTGTCACGGTGAACTACGTAATACATATTCCTGTCAAGTTTGCAACAAAGTGTTCACGCGTAAGGATAATTTACGCGAACACTTACGAACTCACGCTGGTGCACCCTCGAGAAAGAAAAAGCCATGCTCACATTGTTCCAAGGAATTTTACACTACCCAACAGTTAGTTATACACGAGCGCACTCATACCGGCGAGCGACCGGTTCAATGCGATTTATGTCCAAAAACATTCCTTTCCACATTAGCCATGAAAAAGCATCGCCGAGTACACACCGGGGAGAAGCCTTTCGAATGCAAATTTTGTCAAAGAAAATTCGCTGCTAGAGAGACCTTGAATCGTCATCAACGAACGCACACCGGCGAAAAACCGCACGTGTGTCAATACTGCGGTAAATCGTTCATTCAAGCAGCGCAATTGAGGGCGCACGTATTTCATCACACCGGTGAAAATGGCTTCTACTGCGACAAGTGCGGCAAAGCGTTCAATCGAAAAGCTCGGTTGACCCTGCACGTGAAATATGTACACGAAGGTGTAACGCCCTTCAAGTGTGAAGCCTGCCTGAAAGCTTTCACTCGCAAAGAAGATCTAATTAAACATACTATTATACACACGGGAATCAAACCATACAAGTGTAGCAAATGCGACAAATGCTTTGCCACAAAATCGTCTTTGCATGCTCACTCGAATACTCATAAGCGCGAACCACCGCAATCCTGTGCCGAATGTGGGCGAGCGTTCATGCGTCAGGACTGTCTTATGAGGCACATGAGATCGAAACATCGCGAATTGCTGGACGATGTGATGGCCGAAGCCGAGAAGAAGCACTTGCAGTTGCAACTGTTTAATATCGCTTCTACTGCTGTGGAAAAAATCAAAGCGGGAGAATCCAATGCTCTCACTTCGGATGAATTACTCAAAGCTATCGTTGAACTTCTGACTATAATCATCGAGGAGGACACATTGGAAATGTTTGGTTGGCCGGAAGCTCCAATTCAGGATATTTTGGAAGCAGTAATCAGGCGTTGCGGCCACCAGCCGATAACATCGGACAGCGACTTAACGTTTGAACAAAGGTTACGGGAAAACGTCAAATTACTCTTCACTGTGGTTATTGAAGATGAAACTGTAAAGTCTCTTTTGACGACGCAAACAGTGGATGAGGTAATCATGCATGTTTTGAAATTGTCAAAGGAGAACTAA
- Protein Sequence
- MENSVILENNSEISLDPLDSNTVLLTSDGDPKDLKDVLSQNGRIIQIVTDYECVTCHRTFPAEEMLKEHLEVCREEDDSTHILELGSFGNYDSDNDIDDPNSELIDDASNESQQSKNNNGAARIKPVGSNQCHCCAEDLATAHSGGDFKCQSCDLTFKKAHSLERHYIVIHWEEQRSTCKECGSTFRDKKSLEKHRYTTHATHKVYRCEPCDKYFSRSYHLNRHKMQSGCHGELRNTYSCQVCNKVFTRKDNLREHLRTHAGAPSRKKKPCSHCSKEFYTTQQLVIHERTHTGERPVQCDLCPKTFLSTLAMKKHRRVHTGEKPFECKFCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDKCGKAFNRKARLTLHVKYVHEGVTPFKCEACLKAFTRKEDLIKHTIIHTGIKPYKCSKCDKCFATKSSLHAHSNTHKREPPQSCAECGRAFMRQDCLMRHMRSKHRELLDDVMAEAEKKHLQLQLFNIASTAVEKIKAGESNALTSDELLKAIVELLTIIIEEDTLEMFGWPEAPIQDILEAVIRRCGHQPITSDSDLTFEQRLRENVKLLFTVVIEDETVKSLLTTQTVDEVIMHVLKLSKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -