Xcam015419.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xiphydria camelus
Gene Symbol
SCAND3
Assembly
GCA_963678675.1
Location
OY783197.1:17247021-17249975[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00015 0.012 16.5 3.1 1 23 402 424 402 424 0.98
2 15 7.1e-05 0.0057 17.5 1.9 2 23 431 453 430 453 0.96
3 15 7.6e-05 0.0061 17.4 1.2 2 23 542 563 541 563 0.97
4 15 0.00017 0.014 16.3 5.2 1 23 569 591 569 591 0.98
5 15 0.00088 0.071 14.1 0.1 1 23 597 619 597 619 0.95
6 15 0.00031 0.025 15.5 3.3 1 23 635 657 635 657 0.97
7 15 9.8e-06 0.0008 20.2 1.2 3 23 665 685 663 685 0.98
8 15 1.7e-05 0.0014 19.5 1.9 1 23 691 713 691 713 0.98
9 15 0.0012 0.097 13.7 0.2 1 23 719 741 719 741 0.99
10 15 9.2e-06 0.00074 20.3 0.3 1 23 747 770 747 770 0.94
11 15 2.7e-05 0.0022 18.8 1.3 1 23 776 798 776 798 0.98
12 15 0.00017 0.014 16.3 4.7 1 23 804 826 804 826 0.98
13 15 8.9e-06 0.00072 20.4 0.2 1 23 832 855 832 855 0.96
14 15 4.4e-05 0.0035 18.2 0.8 1 23 861 883 861 883 0.95
15 15 5.3e-06 0.00043 21.1 4.5 1 23 889 911 889 911 0.99

Sequence Information

Coding Sequence
ATGGCGATGACGGATAAGAGTAGTACTATCGCTACAATGGATAGCGATAAACTACCGGAACATATTTCCCTAGAAAGCCCAGTACTCTTACACACAAATAATCCTCATTTCGTATCTGTCAAGCAAGAATTGGATTTTCTCGAGGAAAATTTATGTCCCACACGTTTTAAGACGGAACATAATTCCGAAAGTCTTACGATGGACCGAGAAATGAGGGAAACTAATGGTTTAGTATCCTCGTCAATGCCTCTCGACCCAAATTCTACTGTACGACGGATCGACAGAGTCCGTATAAATCAAATACAGAGAAAGGAAACAAGATCGCCATCACACCCAGTGACGATTAAAGTAAACGACAGAGGACAACTCGATGTCGTGGAAATAGATGAAGGACAGGAAACGATTTATAAGTATCTCTTCATATACGAGGATCAGTTTTCAAAGTTTGTCATCCTTAAGGCTTTGCGAAGTTGTTCCATTACGGAGGTAACAAACGAATTGTTAGACGTTCTGACAATTATCGGAGCGCCCTGCGTGCTCCAAAGTGGAAATGGTCGCGATTTTGCTGAGCAAATTGTCCGTGAGTTACGCTCGTTATGGCGGAACGTCTTCATGGTACATGGGAAAGTGGTAAGGAGCAGCGAGTTTGACAAGACACGAAATTTTAAAGATATACTCCAATCTTGGCTCGATAAGAACCCTTTGAAAAAATGGCATGAAGGCTTAAAATATGTTCAAATCTCAGAGAACACAATGTTCCGTCATAGCGACGGTAAGGTTCCTTACGATCTGTTATTCGGGCGTAATGTACACGAAAACTGTCAAAAATACGCGGCGGAAATCGTCGATAGAGTCTGGAGCGAAGAAGATTGGAACAAGATGATCAGGAACGGGAAAGGAGATGATTCGAGTGTTAATCAAATAAAGGACTCAAGGTTCCATCATGGCGAAGAAGAAGCATGTAACGAACCAGTTGATGACGACGTTACGCATGAGAATGATTGCGAAAGCGATTCCCGCGACGCGGAGTACGATGAGGAATCGCACAATTCTTCTAGGAGCAACAACGGTAGGACTGCTTTTAACTTCGTTAACGTTAAAAGTGAAATATCCTTCGGCGCGATGCAGGCGGAAGATTCGCAGTCCGAGGATGAGACAAGCGCGATCGATAGAATTAAAGCCAGAAACAGTGATAAGTATCTTTTcaagtgtaaaatatgccaGAAGCGATACATGAAGTTAGGTCACTTGAATAATCACATAAAGGCGCACACAAAGGCGGGTAAACTAGAGTGTAAGATTTGTTCGAAGAAGTTTCGCCTGGCCAATCTCTTCGAGAAACACATGCGCCGATTTCACAAGCAAAGCACGAGCCCTGACGACACTACTTTCGATAAAGCGGAAAGAGCGGAGGCGGATGATAGCTTGATGGAAAAGCGACTGGACGATAAACTCGACGAAGATGGATCCAGACGGCGACAAAGCACGGAAGGCAATGATAAGTTTGACAAAACGCTGCTTCGTACGGCGAACAAAAATATCGAGTCCACCGAAAGCGCGAGCGTGGTAACTCGAAGAAAGCTGTCCAAAGAGAATCGCGTAACGAAAGGAAATTTACTCTTGGAGTGTATGTATTGCAAGCAGAAATTCGACTTTCCAAGTGTTTTGAAGAGACACATGCGGTCCCACACGAACGAGAGGCCGTACGTTTGTCAAGTGTGCAACAAGCGTTTCAAACAGCACGGTCATCTCAGTCAGCACTCGTTAACGCATACGGATTACCGATCGTTTCTGTGCGTGATTTGCGGTGTCAAGTTCGAAACTTTAGACGCGTTGAAGGTTCATTCTCAGACTCACGGTGGGGAATCCGTAACTTATAGACACAGAGAAATTTATCGCATCTTCGAATGCGACTGCTGCAAGAAGGTGTTCTCAACGAAGAGCGTTCTGGAACGTCACATCTTCACCCACACGCACGAACGGCAATTCGGCTGCAAAGtctgcggaaagcggttcaagCAGGCCGGCCATGTGAAGTCTCACATGCTGGTGCATACGGGCGAACGCAAATTCGAATGCACAGTATGTTCCAAGCGCTTCAGCCTTTCGAACTCTCTCAAGAAGCACATGTACGTGCACAGCGGCGAGAAGCCGTATCAGTGCGACGTCTGCGGCGCCCGATTCCTCGAGAAGCGAAACCTCAACGGCCACTTGATGACGCACACCAACGAACGCCCGTTTTCCTGTAAAATCTGTGGAAAACGGTACACGCTCGCCGATACCTTACGGCGTCACATAAGCGCGGCGCATGAGGACGGTCGAACTTATCAATGCGAGATCTGCGCGAAGATGTTCAAACAACTCGCGCATCTTTCCGTGCACAAGAAAGTGCACAACGACGAGCGCCCCTTCCAATGTCATCTGTGCGACAAGAACTTTAAGCACAAGAACGTCCTTAAGTCTCATTTAGCGATTCACGCGAACGTACGACCTTTCGAATGCGACGTTTGCAAGGCGACGTTCGTGCGAAAGACGAATCTGCAGACGCACATAGCATCTGCGCACATGAACGAGCGTCCCTACGCTTGTACgatttgcaacaaaagattcaaGCAAGTCAGCCATTTGAACGGCCACGTAGTCGTTCACAGTAATTCGATGCCGTATCAGTGCGATTTTTGCGATCGTCGATGCAACAGACTCGACAATCTGAAGAAACACATGCGTCTCCATACGAAGAACAAAGAGTAA
Protein Sequence
MAMTDKSSTIATMDSDKLPEHISLESPVLLHTNNPHFVSVKQELDFLEENLCPTRFKTEHNSESLTMDREMRETNGLVSSSMPLDPNSTVRRIDRVRINQIQRKETRSPSHPVTIKVNDRGQLDVVEIDEGQETIYKYLFIYEDQFSKFVILKALRSCSITEVTNELLDVLTIIGAPCVLQSGNGRDFAEQIVRELRSLWRNVFMVHGKVVRSSEFDKTRNFKDILQSWLDKNPLKKWHEGLKYVQISENTMFRHSDGKVPYDLLFGRNVHENCQKYAAEIVDRVWSEEDWNKMIRNGKGDDSSVNQIKDSRFHHGEEEACNEPVDDDVTHENDCESDSRDAEYDEESHNSSRSNNGRTAFNFVNVKSEISFGAMQAEDSQSEDETSAIDRIKARNSDKYLFKCKICQKRYMKLGHLNNHIKAHTKAGKLECKICSKKFRLANLFEKHMRRFHKQSTSPDDTTFDKAERAEADDSLMEKRLDDKLDEDGSRRRQSTEGNDKFDKTLLRTANKNIESTESASVVTRRKLSKENRVTKGNLLLECMYCKQKFDFPSVLKRHMRSHTNERPYVCQVCNKRFKQHGHLSQHSLTHTDYRSFLCVICGVKFETLDALKVHSQTHGGESVTYRHREIYRIFECDCCKKVFSTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECTVCSKRFSLSNSLKKHMYVHSGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
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80% Identity
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