Xcam015642.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xiphydria camelus
Gene Symbol
-
Assembly
GCA_963678675.1
Location
OY783197.1:21892932-21898602[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.063 5.1 8.2 3.1 1 23 18 41 18 41 0.96
2 26 0.038 3.1 8.9 3.8 1 23 49 72 49 72 0.96
3 26 6.5e-05 0.0052 17.6 1.6 1 23 78 100 78 100 0.98
4 26 0.0033 0.27 12.3 2.1 1 23 105 128 105 128 0.93
5 26 0.068 5.5 8.1 4.6 2 23 137 158 136 158 0.96
6 26 7.9e-07 6.4e-05 23.7 0.8 1 23 162 184 162 184 0.98
7 26 0.00019 0.015 16.2 1.0 1 23 190 212 190 212 0.96
8 26 1.3e-05 0.0011 19.8 0.3 1 23 218 241 218 241 0.98
9 26 0.011 0.86 10.7 0.0 2 21 444 463 443 464 0.93
10 26 0.011 0.9 10.6 0.0 1 23 472 495 472 495 0.97
11 26 0.029 2.3 9.3 3.5 1 23 505 528 505 528 0.96
12 26 0.017 1.3 10.1 1.7 3 23 539 560 537 560 0.91
13 26 0.00054 0.044 14.8 3.2 1 23 565 588 565 588 0.97
14 26 0.00076 0.061 14.3 0.2 3 23 594 614 594 614 0.99
15 26 0.0032 0.26 12.3 3.3 1 19 618 636 618 640 0.94
16 26 0.0042 0.34 12.0 0.1 2 23 647 669 646 669 0.95
17 26 1.5 1.2e+02 3.9 3.6 1 23 675 698 675 698 0.97
18 26 0.00036 0.029 15.3 1.1 1 23 926 949 926 949 0.96
19 26 9.4e-05 0.0076 17.1 2.5 1 23 955 977 955 977 0.98
20 26 0.029 2.3 9.3 7.8 1 23 986 1009 986 1009 0.94
21 26 0.0016 0.13 13.3 1.8 1 23 1015 1037 1015 1037 0.96
22 26 0.00011 0.0086 17.0 2.3 1 23 1042 1065 1042 1065 0.96
23 26 0.002 0.16 13.0 0.7 1 23 1071 1093 1071 1093 0.98
24 26 3.2e-07 2.6e-05 24.9 1.4 1 23 1097 1119 1097 1119 0.98
25 26 0.00082 0.066 14.2 5.0 1 23 1125 1147 1125 1147 0.98
26 26 0.00015 0.012 16.5 2.3 1 23 1153 1175 1153 1175 0.97

Sequence Information

Coding Sequence
ATGAAACACAAACTCAAGAAGCATATGCTGACGCACAGCACTCATCATCCTTTCAAATGCGATGTCTGCCAGTCCAGATTCAAGTACAGGTTCAATATGGTGATCCATAAAAAACAGCAACATGATGAAAACGAGGTACCTCGCTACAACTGCAAACTCTGTACTTTCACCACCAAGGACAAGGCATACCTTTCCAAGCATTACACGAGGAAGCACACCGAAGTCTACAACTTCACCTGCGAGCAGTGCGGAAGGAAATTCAAAATACTCGAAGACTTAAAGCATCACATAGTCACTCATGAAGTCGGTCAGTTCATCTGCGAAATCTGTGGTGCCTGCTACACGAATAGGAGTTCTTTGAACTTCCACATTTACCGCAAGCACAGACCTCCCGGCAGTCAGCTCGTGGAGTGCCACTTCTGCCACAGAAAGCTCAAGGGCCGCTTCAGCCTCGAGAGACATTTGCAGTTGCATAATCAAGAATTCGTTTGCCAGGAATGCGGCGCAAAGTCGAAGACTAAGGATAACTTGAAGAAGCATATGAGGGTGCATACGGGCGAGAGATCCTATCTGTGTTCTATTTGCGATAGAGCGTTCACCTCGCAGAGCACTCAGAGAATGCACACTCTGACACACACGGGTGAACGTCCATATGTTTGCGACGTGTGCGGTCAGAGCTTCACGCAGCGCAGTCCTATGGTGAAGCACCGTAGAATTCAGCATCCTGAAGTCGAGGGAATGCCGCCACCCATCAGCGATGTTGAAGCTAGTAGCCAAAATAGGATCATGGTCCATCATTCGTCTGCCGCCTTATTGGAACTAGTGCGAAATAACGTCTCACCGCTACGGGAGGAATCCAAGAAGACCGAGACGTTGCATTCCCAAACGGAGAACCTCGTgaagaaagaaaagaatgaGGTTCAACGGGTTCCGAAGAAGCGCAGAGTAATTAATATTCTAAGAAAGAGAAGAGCAGCAACACCTGAAACTACTCAACGCCGAATATCCAACTCATCGATGATGAGTGTATCCGAAAACGAAATATCCCGCGAAATTAAAACTGAGGTGGTAACCGATGACGTTGCTAGCACAGGAAGTCCTTCGGTCGGGAACACCCGTGTCGAAGATGATTTTATAGAATGGGAGCCCATCAAGATAGAACCAGGCATTGAGAAAACGGAAGATGTAGACGTAGATGTAGATGTAGACGTAGATGTAGATGTAGAAGGAGAAGGTGAAGGCTGCACCGAAAATCGAAGAATCAAGGGCAGAAGTAAAGGCATGAAGTCGAAACGCTACTATCTATCCGATCCACAATTACTCGGCATCCCCTGCAAATATTGCGGTGCGAGGTACGAGTCGAAAGAAGAAGTGGAGAAGCACATAGCGCGGGTGAGGGCGAGCGAGAAGCCCTATAGCTGCAGAATATGTCCCGCAATTTTCGACGAGGGAACTGCATTGATACGTCATATGACGACGATTCACTGCAACATTAGAAAAAGGAACCCGCCTTATTATTGTAAAAAATGCCTCTACAGTAGCACCAGGCAGCGTGATCTTAGCACGCATTACATTAAGAAACATAAGTTGGATAAAACGTTATCGTCGATGAACTGTTCGCACTGCACCAGGAAGTATACGACGGCGGAGGCTTTTAAGTCTCACTGGGCGCAATATCATGAAAAAGGGGACTTCGAATGCCAATTGTGTGCTCGACAATTTACCACAAGATACTGCCTTATGCGCCACATGTCGTCGATCCATTTTGGCAAAGTTGGCTGCGATGTATGCGGCAGACGACTGATGAGCGCGGAGAGCCTGAAGAAGCATATGTTGATACATCGTCGGATCTACGAATGCCACGATTGCGGTGCAACTTTCAAGTACAAGACACCCCTGAAGAACCACTGCGCCGGACATTCTGGAGGCAAGATCTGGGTATGTCCGATTTGCAAAATTCAACTGAGTCATCAGGGCGCTCTTGCTATGCACATGATACGGGAACATACGAACTTGAAACCGTACACCTGTGACTGCTGCCGAGAAAAATTCTTAACGCGTAAGGAACTGTTGATCCACCGACGAACATTGCATCCTGCAGCGGGCGGACAAATAGATCGCATTTCTCTCGTCCAAATCTACAAGCAAATCGAGGTGGCTCTCGAGGAAAATAAGAGGAAGAAGTTGAAGCAAATCGAGTTAGTACTGCAGAGGACAAAGAGGATCAGGAATTCATCCCGTCgtttaaacgggaaaaagaaaacccTCGCCACCGTTCAAGGCAGGAGTGAATATAAGCTTCTGCACAACAATCGAGGATCGCGAGCAACCAGGAGAAAAGTCGGGCAGCTGAAGCAGCGCAAGATGAAGAATCGACGCTCCGGGTCATCGAATGACCATCGCAAGGTCGTCGAACAAGATGAATTTTGCGTTCTTATATCTCCAAAGGTGAACGAAGAAAGAGAACTAAGGGCGACTACGGAAAAAAGAAAGATCCCGAGGAGAGAAAGTCGGAATACCAGGAGAAAATCTTTTCCCAAACCCAAGGAGACCGTAGCGAAAATTCGCATTCGCAGGCGCGCTCGCGACTCTTCTGTCTCTCCTTCACCTCTAGTACCGTCTTCTTGTTTAGCGGACCCTGAAAATAATTCCAGTTGCTGTAACGACTCTGACATTGCAGGCGAAAATACACATCACGAACttgaggaggaggaagaagacgaTCCCAAGAAGAGGGAAAAAGACATGCTCTACAAAAGACTCAATGACGGCAACTACACTTGCGATATTTGTCAGTTGACGTTCGAACAAAAAAGCAAGATCCTTCGTCACATAACAAGCAAGCACAGTTTTCACAGGCCCTTCAAATGTGCCGTCTGCTCGAAGGCTTTCAAGTACAAATGTGACCTTAAAGCACACAGACTCGTTCACGAGGAAATCGATTCGAGCATGCTTCACTGCTGTGACAAATGCGATTACAGAACGAAGACGAAGAACAACTTAAAGTCCCACTACATCAGAAAGCACACGGACGACTACAAGTTCAGCTGCGAGCACTGCGGCAAGCGTTTCAAAATGGAGTGGGACCTCAAATTCCACATCGGTACTCATAGCAATTCCCAGCATATGTGCGATGTGTGCGGCAGGTtttacaccagcaattattctcTTTATAAGCACCGGAAGGTAGCCCATCTGAACGAGTACAAATTCCAATGTTCCATCTGCAACAAGAGGCTGCTTACTCAGGAGAATCTGGATAATCACATGCTGCAGCATAATCAGACATATTCTTGCAAAGAGTGCGGCAAAACCTTCGCCTCTAAGAGATACCTGGCGACTCACATGACCACTCACACGGGTGTCAAGCCTTATCCTTGTCATATTTGTGAGAAAAACTTCAGGACATCCCACATGCGAAATACGCACCTCCTCACGCACTCAGCAGAACGACCACACATCTGCGACCTGTGTGGCCAAGCTTTCAAGAGGAGGTACTACATGATCGAGCATCGTAGAAAACATCCGGACGCCCACTTGTCATCACCGCCAGTGCCGCTTGGCAAAAATAAGTGTCATGTGGGATCGACCGATAACTAA
Protein Sequence
MKHKLKKHMLTHSTHHPFKCDVCQSRFKYRFNMVIHKKQQHDENEVPRYNCKLCTFTTKDKAYLSKHYTRKHTEVYNFTCEQCGRKFKILEDLKHHIVTHEVGQFICEICGACYTNRSSLNFHIYRKHRPPGSQLVECHFCHRKLKGRFSLERHLQLHNQEFVCQECGAKSKTKDNLKKHMRVHTGERSYLCSICDRAFTSQSTQRMHTLTHTGERPYVCDVCGQSFTQRSPMVKHRRIQHPEVEGMPPPISDVEASSQNRIMVHHSSAALLELVRNNVSPLREESKKTETLHSQTENLVKKEKNEVQRVPKKRRVINILRKRRAATPETTQRRISNSSMMSVSENEISREIKTEVVTDDVASTGSPSVGNTRVEDDFIEWEPIKIEPGIEKTEDVDVDVDVDVDVDVEGEGEGCTENRRIKGRSKGMKSKRYYLSDPQLLGIPCKYCGARYESKEEVEKHIARVRASEKPYSCRICPAIFDEGTALIRHMTTIHCNIRKRNPPYYCKKCLYSSTRQRDLSTHYIKKHKLDKTLSSMNCSHCTRKYTTAEAFKSHWAQYHEKGDFECQLCARQFTTRYCLMRHMSSIHFGKVGCDVCGRRLMSAESLKKHMLIHRRIYECHDCGATFKYKTPLKNHCAGHSGGKIWVCPICKIQLSHQGALAMHMIREHTNLKPYTCDCCREKFLTRKELLIHRRTLHPAAGGQIDRISLVQIYKQIEVALEENKRKKLKQIELVLQRTKRIRNSSRRLNGKKKTLATVQGRSEYKLLHNNRGSRATRRKVGQLKQRKMKNRRSGSSNDHRKVVEQDEFCVLISPKVNEERELRATTEKRKIPRRESRNTRRKSFPKPKETVAKIRIRRRARDSSVSPSPLVPSSCLADPENNSSCCNDSDIAGENTHHELEEEEEDDPKKREKDMLYKRLNDGNYTCDICQLTFEQKSKILRHITSKHSFHRPFKCAVCSKAFKYKCDLKAHRLVHEEIDSSMLHCCDKCDYRTKTKNNLKSHYIRKHTDDYKFSCEHCGKRFKMEWDLKFHIGTHSNSQHMCDVCGRFYTSNYSLYKHRKVAHLNEYKFQCSICNKRLLTQENLDNHMLQHNQTYSCKECGKTFASKRYLATHMTTHTGVKPYPCHICEKNFRTSHMRNTHLLTHSAERPHICDLCGQAFKRRYYMIEHRRKHPDAHLSSPPVPLGKNKCHVGSTDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-