Xcam000484.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783191.1:8182840-8184754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.97 79 4.5 0.5 2 23 108 129 107 129 0.95 2 16 2.1e-05 0.0017 19.2 0.8 2 23 134 155 133 155 0.97 3 16 7.2e-06 0.00058 20.6 2.8 2 23 162 183 161 183 0.97 4 16 0.0043 0.35 11.9 0.2 1 21 189 209 189 210 0.94 5 16 6.9e-07 5.6e-05 23.9 0.9 1 23 234 256 234 256 0.98 6 16 0.0027 0.22 12.6 0.3 1 23 262 284 262 284 0.98 7 16 6.5e-07 5.2e-05 23.9 0.9 1 23 290 312 290 312 0.98 8 16 9e-07 7.3e-05 23.5 2.5 1 23 318 340 318 340 0.97 9 16 4.3e-05 0.0034 18.2 0.6 1 23 346 368 346 368 0.98 10 16 2e-06 0.00016 22.4 3.3 1 23 374 396 374 396 0.98 11 16 4.9e-08 3.9e-06 27.5 0.8 1 23 401 423 401 423 0.97 12 16 0.00023 0.019 15.9 0.1 1 23 429 451 429 451 0.97 13 16 2.3e-06 0.00018 22.2 7.4 1 23 457 479 457 479 0.97 14 16 0.00014 0.012 16.6 0.4 1 23 485 507 485 507 0.96 15 16 1e-05 0.00082 20.2 2.4 1 23 513 535 513 535 0.97 16 16 6.4e-05 0.0052 17.7 0.6 1 23 541 564 541 564 0.92
Sequence Information
- Coding Sequence
- ATGGAAGAATTTAAAGTGAAAGATGAGCCGGACGCATTAGCTATAGTTACTCGGGTCATGGACGAAAGCATCGTCAGCGTAGTACTTAAAGAAGAACCCGAAGGTTTCGATCCCGAACATATGGAGGCTATCTGTTCCACCAACTTCGAGGAGGTCTTTCTCCCGCATCTGGAAAATCAAGGCGCCAATTTCACGGCGGACATGGTAAATTTGGAAATGAAAAACGACCATAGCGGCAATCGCAGTTGGATTCAAGAATCCGCCAATAATATATGCGACAGTCTGTGCGGCGACGCGCAGCAATCCAAGTTCTATAAGGTTCAGTGCACGGTCTGCAAGAAATGGTTCTTGGAACGAAAGTCGCTCGTGGGCCATTTAAAGACGCACTGCAGCGGGAATCAGTGCGAAGTTTGCGAACAGAATTTTGAGTACAAGTCCAACTTGCACGCGCACATGCTCATACACGCCAGCATGAATTTGCTGGAGTGCAACATTTGTCAGAAGAGATTCGCGCACAAGTGGCGCTTGCGCAATCACATGCAGACGCACATCCTCGAGAAGCCGTACGAGTGCGACACTTGTCAGAAGTCGTTTCTGGAGAGATCGGGCCTGACGAATCATCTGCTCTCGCCGTTCATCGACTCGTCCCTGGATCAGGCGTTCCACACGGTTCTGAACGGCCACGGCCAAGAGAGGCTGTACGAATGCGACGTCTGCAGAACGACGTTCAGAGAGAAGGAGAATCTAAACAGACACATGCTGATGCACAATACCGACAGGCCGTTCAAGTGCGGAATCTGTTGCGCGGCATTCCGAGAGGAGGGCAATCTCAACGTCCACATGTCCGTTCACACGGGCATCAAGCAGTTCAAGTGCTCCATGTGCACCAGATCGTTCTCGCAGCAGTCGGCGCTCGACAATCACATGCTCGTTCACAGCGGCCAGAGAACGCACGAGTGCAACATCTGCCAGAAGACCTACAAACGAAAGTCCGAGCTGATTCGGCACACTCTGGTGCACACCGGCGAGAGGCCGTACGAGTGCAAGGAGTGCCTGATGACTTTTCGCGAGAAGGCCAAGTTGAATTCGCACATGCTCGTTCACACCGGCGAGAAGCCGCACAAGTGCAACATCTGCTGGAAGGCCTGCGCGAGAAAATCCGACCTGAACAGCCACATGCTCACGCACACCGGCGGCCAGTACGACTGCAAGGTGTGCGAGAAGATATTCACGAGAAAATCAGACTTGAACAGGCACATGCTCATTCACACGGGCGAGAAGCCGTTCGCGTGCGATCTCTGTGACATGGCGTTCCGAGAAAAAGCAAGACTGAATTCCCACATGATCATACATACCGGGGATAGAAAACACGAATGCCACATCTGCCACAAAACCTTTACGGAGAAGTCGACGCTGAAAAAGCACATGCTCATTCACACGGGCGACAAGCCCTACGAGTGTATCGTATGTCGAAAGGCGTTTACCCAGAAAACGACTCTGAACAGTCACATTCTGATACATACCGGTGAGAGACCCCACGAATGTAACACCTGTCAAAAGATGTTTCGAGAACGGTCCGCGTTGAGGAAACACCTGTTGATTCATGCGAGAAAGAAGCCGTACGAATGTCTCGTTTGCCTCAAAAAATTTACCTACAAATCCGCACTGAAGAGCCACATGGGCGCGAGTCACTGTTCTTAG
- Protein Sequence
- MEEFKVKDEPDALAIVTRVMDESIVSVVLKEEPEGFDPEHMEAICSTNFEEVFLPHLENQGANFTADMVNLEMKNDHSGNRSWIQESANNICDSLCGDAQQSKFYKVQCTVCKKWFLERKSLVGHLKTHCSGNQCEVCEQNFEYKSNLHAHMLIHASMNLLECNICQKRFAHKWRLRNHMQTHILEKPYECDTCQKSFLERSGLTNHLLSPFIDSSLDQAFHTVLNGHGQERLYECDVCRTTFREKENLNRHMLMHNTDRPFKCGICCAAFREEGNLNVHMSVHTGIKQFKCSMCTRSFSQQSALDNHMLVHSGQRTHECNICQKTYKRKSELIRHTLVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHKCNICWKACARKSDLNSHMLTHTGGQYDCKVCEKIFTRKSDLNRHMLIHTGEKPFACDLCDMAFREKARLNSHMIIHTGDRKHECHICHKTFTEKSTLKKHMLIHTGDKPYECIVCRKAFTQKTTLNSHILIHTGERPHECNTCQKMFRERSALRKHLLIHARKKPYECLVCLKKFTYKSALKSHMGASHCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -