Xcam008834.2
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783194.1:18548583-18550288[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-07 0.00016 21.8 0.0 4 38 16 50 13 54 0.87
Sequence Information
- Coding Sequence
- ATGGGTCGCAGCTTCAAACGCAAGACACCAGCGCGTGATCCGCTTGCTCTTCGACGTGCATTGGCAGCAATGATGCTTGGCATGTCTTGCAAAGGTGCCGCTCGAGAATACAACGTGCAACGCTCCACATTGCAAGGtcattggaaaaaaaatcaaaatgaaCCAGTGCACACGGACAGCGCGACGCCAATGGAAGTTTTTACAAAAGAACAAGAAGATGCCTTAGAAAAACATATGTTGCATTTATCAGACGTGTATTTTGGCTTGACCACAAAGCAAGCTCGTTCATTGGCATTCGAGTTCGCTGAAAAACTAGAAATCGTTTATCCAAATGCTTGGGATAATCAAAAGTCAGCTGGTTTGGAATGGTTTCGTTCATTTTTGAAACGGCATCCAAAATTGTCCCTCCGAAAGCCAGAAGCTACCAGTTTGGCTAGTGTTAGCGCGTTCAACCGCGCAAATGTTGGAGCGTTCTTTGCCAATTATAACCAAGTTATGGGAGATATAAAAGTTTCCCCGCACAACATCTGGAACGTCGATGAGACTGGTGTGACCACTGTACACAAAACAGTGCGTGTCTTGTCTCGTTGTGGCCGAAAGCAAGTTGGACAAATTACGTCGGCAGAACGTGGACAACTGGTGACTTTAATCCAAGCAGTATCCGCTGCCGGTATGCGCGCCCCGTCTTTCTTTGTCTTCCCACGCGTCCGCTTTCATCAACATTTCCTCAACGGAGGTCCCGCAGGTTGCGTCGGAGCTGCAAATCCATCTGGGTGGAGTAATGCTGAGgtctttttaaaatttttgacaacatttcaaaaattcacaagATGCACTGTGGCTGATCCTATTCTCCTACTTCTGGATAACCATGAATCTCATCGATCACTGTCAGCTCTCGAATACTGTCGTGCCAATGGGATCCATGTTGTGTCCTTTCCACCTCACTGTTCCCATCGACTCCAACCACTAGACGTCAGTGTCTTTGGACCTTTCAAAGCCGCGTTAAATACGCAGTACGAGTCGTTCATGCGCATGAATCCTGGTCGCGCGATTCAGATTTTTTATATTCCTTCAATGGTAGCCCGAGCGCTCGAACTCGGTGCCTCAGAAGTGAACATTAAATCGGGCTTCAAAGCAACGGGCATTTGGCCGATGGATCCTAATATCTTTCAAGATATCGACTTCTTGCCGAGCTCTACGACAGATCGACCATGTCCAGACAACAATGACATCCTCAATGCCGCAAGAAAAGAAGTAGTTGAGGTGGAAGATAACGTCGAAGCCATTGTGCCAGACAATGGAAATGAGGAAGCAATTCATGAAGATTTGATTAACTGTTCAGAGAAGTCGATCAGTTTGCCCTTGCTGTCTTCCTCCTCGACATTCGAAAAGGACACCCTAGAAAGTCTGTCACCATTCCCAAAAGCACCACCACGCAAAATGACGGGTAAACGACGAGGCCGAAAGCCAGGCCGAACCACTATTTTAACAGCTGATGCTGAAGTCAGCCGTATCGCTGAAGAAGTACAACATCGCACCAAAGGAAAGAAATCACCAGGAACACCGCGAAAAAACAAAACAGGATCTGAAACATGA
- Protein Sequence
- MGRSFKRKTPARDPLALRRALAAMMLGMSCKGAAREYNVQRSTLQGHWKKNQNEPVHTDSATPMEVFTKEQEDALEKHMLHLSDVYFGLTTKQARSLAFEFAEKLEIVYPNAWDNQKSAGLEWFRSFLKRHPKLSLRKPEATSLASVSAFNRANVGAFFANYNQVMGDIKVSPHNIWNVDETGVTTVHKTVRVLSRCGRKQVGQITSAERGQLVTLIQAVSAAGMRAPSFFVFPRVRFHQHFLNGGPAGCVGAANPSGWSNAEVFLKFLTTFQKFTRCTVADPILLLLDNHESHRSLSALEYCRANGIHVVSFPPHCSHRLQPLDVSVFGPFKAALNTQYESFMRMNPGRAIQIFYIPSMVARALELGASEVNIKSGFKATGIWPMDPNIFQDIDFLPSSTTDRPCPDNNDILNAARKEVVEVEDNVEAIVPDNGNEEAIHEDLINCSEKSISLPLLSSSSTFEKDTLESLSPFPKAPPRKMTGKRRGRKPGRTTILTADAEVSRIAEEVQHRTKGKKSPGTPRKNKTGSET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537857; iTF_01537864; iTF_01391026;
- 90% Identity
- iTF_01537857; iTF_01537864;
- 80% Identity
- -