Xcam017509.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xiphydria camelus
Gene Symbol
gcna
Assembly
GCA_963678675.1
Location
OY783198.1:22371731-22377844[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.6e-07 0.0001 22.4 0.0 1 41 14 54 14 58 0.94

Sequence Information

Coding Sequence
ATGCAAAACGAGCGCGAGAAGAGAAAATACAGATGCTGGACGAAAGAGGACATGGCGCGAGCAATTTCCGCGTTTAAAAAGGGAGAACACGGTCTCAACGAAACGTCTAAGATTTATAAAATTCCCAAACCGACGCTGAAGCGTCATCTGGAAGGAAAGAATGTTTACGCGAACGGAAACTCGTCGTTCGTAGGTCGACCCACGGTTCTAACGCCCGATTTGGAACAAAAACTGACGGAATACATTTTGAGAATGCAAGCTAACATGTCCGGATTGACGATCGAGGACGTTCGAAGATTGGCGTTTCAGATCGCCGAGCATAAAGGCATTCAGCACTCGTTCAACCGGCCGGAAAATCCGGAAACTGCCCGAACTAAAGAACTGAATAAGAAGATTATTTCCGAGTATTTTGATGATCTGGAAAGGATACGCGCCGAGAATTCTCTGGACGCGACTAGAGTTTACATTGTTAGCAAATGCAAGCTTTCCACCACGCAGAAAGGTGGTCAGAAATCTGCATCCTCCAAAGAGTATCAAGGGATGAACGGTATTGACGATAAAGGAATCGATATCACGATAATGTGCTGCGTGAACGCAGCGGGAATGTATGTGCCTCCTATGCTGATGTTTAAAGGAATGATAATGGAGGAAGCGTTACTAAAATGTGCTCCACCTGGGAGCATAGTTCACGTATCAGAAACTGGGAATATCAACAGCGATTCGTTTATTGCTTGGTTAAAGCATTTCCTTGCCATGGTTCGCCCAAATAAAGCCAAATCAATTCTTCTGTGCATAGATGGACATCCCATGTACTCTAAAAATACTGAAGCTCTCTCTTTGGCTCGTGAAAATGGTATAGTCTTGCAGCAGTTGCCAAATAACAGTGGGCATTCTTGTCGTCCTCTAGAAATGGCTTTCTTCAAGTCATTAAAGTCGTTCTACTCTCAGGCTACTGAAGAGTGGACGCGCGAAAATCCTGAACTCTGTATCAAGCAGTATCAAGCATCTCGATTACTTGCATCGGCCTATGAAAAGGCAGCTTCCGTTGAAAATGCGATAATTGGTTTTCAACATGCTGGACTATGGCCAAGTACATGTGGAAATAAAGAAGCTGGAGTAAAGCTCGTCAATGAAAATAAAGGTATCTACAAATGTCCTGGCTCAGAAAGTACTTTTGGTACTGGCTCGTCGATGTACGGTTCCCAGAACTTCAGGTTGAGATTGTCGGAGAGTTGTTTAACAAGCGACAGTGATGAGAGTGTCACACGAGATGAAATACGTCCTGACGATAAAATTGAGTCTGCTGAGAAATATTCCATTATAGAACTCAGTGATTCGAGTAACGACAGCATTCTAGGTAGCCCTGaatggaaaaaaatatattctggATCATTGGTGCAGAAAAGCTATACCAAAACTGGGACCAATCGTAAAAGCGTTTATATCATCGACTCTTCGGATGATACCGACGATTCGCGTGAATTCAGAAGCAAGAAGTCTTTAGAAAATCATAGGATCGAGGATGCctttgaaaaattgaagaacTCTGGTCCCTATAAGAAGCATGGAAGCAGTACTCATTTGAGTTTTGAAGATATCTCACCTGCAATTGACAAAGGAAATAATAGAAAAAACTCTAGAATCTCATTAGACGATACCattgaaaaattgaagaacTCTGATCTCTATGAAAATAATGAAAGCAGTATATGTTCGAGTTTCGAAATTATTGATTCTTTAATTAACCAAAAAAATAACGAGGAAAACTGCAGTCATTCATGCTCAGGTAGCAGTACTCATGTTAGTCGGACTCAGGAATTCGAGGATCCTACAAAATGTAAGAAATACGATGCGAGTTGCAAAACTTGCGGTATTGTCGGGGATACACTCAAAACTGCTGGAATTCCTATAGATTCAGCGGTATTCAGCACGCACATAACTCCCAAAGTTCGTAGCAATAATTGTTTGCTAGTCAAAAGCGGAGGATCGGGTAATGCAACGAAGGAAAGGAACAAACTCACAAAAATACAAGCGTACAATATTCTGAAGACTATAAAATCAAAGAAAGCCGTATATTATTCTCCAAAAGATCGGAGGGAAAATAGAAAAGCTGCTGATCGCTCTGTGGAGGAGAGCGGATATCCGCTCGATTTGTCAGAGGATGAGTCTAATCACGAACAAGAAAATACTGACAAGGGAAAGGCAATGGTCATCAGTGAAACAGATTCGGAAGACGAGGAGATCGTGCTACAACCTGAATCGGACACGCGGAAGCCGCAGAAGACTCACGTGAGCAGATTTTTGAATGACGAACTGATGCTTCTTGAGCTTTCGGAACGAAAGAAGAAAGACATTTCAGAATGGCTATTGAACAATTCAGCGGGATTTGCAAGCGATAGCTCGTGCGATCATGTTTCCGAAAGCAATAGAAACAGCGTGAGCTCTGGAAACAGCAGTTTGGAAAGATTCGAAATGAATCACGAAACTCCCAATAACAGAGGAAAACTATCCAAGGTGAACACGGCCGAGAAAAAAATCGCTGACCCGGATGCGACTACAGTGGTGCAATCCGTGCTGAATCGACAGACTACACTGgataaattttttgaaattccGAAGCGTGGTGTACAGGATCTTCGTACACCAAAACGTACCACGAACAAGCCTATTTCCGAGAAGAAAGATCGCAAACCCAATCAGTCGACGCCTCCCGCGACCAGCGCATCCAAGGAAAACTCTGCCATGAAGGATTGCGAGAAAATCTTGGATAACTTGTACGGGAAGGATTGGCGTGCAAAGGCCAATGCAGTGCTTCCTACTTCCGAACCGAGGAAACAGATCGTTGCGAAGAAAGACAGAGGTGTTCAGACTGAGAGAAAACCGAAATTAAAATCAAAGAGTGATGCGAGGGCTACGGTTTATTCGGATTCCGACGACGATAGTTTTGATGAATTTATTCAAAAAAGAAAGCCATTGTTAAACTCCACAACCAAGCCGCAGCCGGAAAATAAGAAAGTGGCGGATAGTTTTATAAACGATGAATTTGAATCTGAAAGCAACAATAGTACTTATTACACGGCACTAACTAATCCCAGAGTCTCGAAAACTCCGAGTGTAGGAGTTCGAAAAACGACTGCGATATCTGCTGCTGTTGAAAGAGCTCTAATGATATGTGATTCCGAGAGCGACGAAGAAAGTAACAGAGGATTGGTGAACAAGACGACCTCCAATAGAAGAAGACTATCGTACTCTGATGACGAGAGTGGTTCCAGTACAAGTGAATTCGATCCGGGTGAAGTGATACCTCCGAAATCGACGATTAAAAAAGGCCCTGGAAAGACGTCGCGGACGGTTCAGGGTCCGCCCAAGTCATCAGCAACGAAATTTATTGATCCAGTGCGGCAAAAATCGAAAAGCTTTTTAGCATCGCTGTCGGCGAACGTCCCGCTGGCGGACGCTCATCCCGACGCAAAGAAATACAGGACGGATTATAAGAAGAACAAGGAAGACCTGTGCAAGTATTTGTTCAAGATGTACAATCGAGAGATATTCGACAACAAGTTGCCGGATGATATGACGATCGAGTGGAACGTCCGAATGCGAGGAACGGCTGGCTTTTGTTACAATAAAACATCGGTTAAAACTCTCGGAGGCGTAACCAGATCTTCGAGATTAGTTTTGGCCCAGAAGATTCTGGATACCCCTGACAGACTGAGGGATACACTCATTCATGAAATGTGCCATGCTGCCGCTTGGTTGATCAACAACGTGATGGACGGACACGGACCGTTTTGGAAAGGATGGGCCGGCAAAGCAATAAAGAGATTCCCGGAACTGCCACCTATAAGCCGCTGTCACGATTATAAAATTTCGACAAAGTTTACTTATCGATGCACGAGCTGTAGTTACAGTATTGGAAGACACTCCAAATCTTTGGACATCGAGAGAAAGCGCTGTGGCTATTGTTTCGGGAAGTTCGAGCTACTGGTGAACAGAACTACAAAGTCCGGTAGGGTGCAGGTGCAAACACCGTTGCGCGTGAAGCAACCGTCGGGATTTGCTCTATTCGTGAAGGACAATTACCATTCGGTAAAGAAGACGAGACGCAGTATAAAGCACGGAGAAGTAATGAAGATTTTAGGTCAGCAGTTCTCAGCTGTTAAGATTTCCAAGCAAGCTAATGACGCCAAGAACGCGTAG
Protein Sequence
MQNEREKRKYRCWTKEDMARAISAFKKGEHGLNETSKIYKIPKPTLKRHLEGKNVYANGNSSFVGRPTVLTPDLEQKLTEYILRMQANMSGLTIEDVRRLAFQIAEHKGIQHSFNRPENPETARTKELNKKIISEYFDDLERIRAENSLDATRVYIVSKCKLSTTQKGGQKSASSKEYQGMNGIDDKGIDITIMCCVNAAGMYVPPMLMFKGMIMEEALLKCAPPGSIVHVSETGNINSDSFIAWLKHFLAMVRPNKAKSILLCIDGHPMYSKNTEALSLARENGIVLQQLPNNSGHSCRPLEMAFFKSLKSFYSQATEEWTRENPELCIKQYQASRLLASAYEKAASVENAIIGFQHAGLWPSTCGNKEAGVKLVNENKGIYKCPGSESTFGTGSSMYGSQNFRLRLSESCLTSDSDESVTRDEIRPDDKIESAEKYSIIELSDSSNDSILGSPEWKKIYSGSLVQKSYTKTGTNRKSVYIIDSSDDTDDSREFRSKKSLENHRIEDAFEKLKNSGPYKKHGSSTHLSFEDISPAIDKGNNRKNSRISLDDTIEKLKNSDLYENNESSICSSFEIIDSLINQKNNEENCSHSCSGSSTHVSRTQEFEDPTKCKKYDASCKTCGIVGDTLKTAGIPIDSAVFSTHITPKVRSNNCLLVKSGGSGNATKERNKLTKIQAYNILKTIKSKKAVYYSPKDRRENRKAADRSVEESGYPLDLSEDESNHEQENTDKGKAMVISETDSEDEEIVLQPESDTRKPQKTHVSRFLNDELMLLELSERKKKDISEWLLNNSAGFASDSSCDHVSESNRNSVSSGNSSLERFEMNHETPNNRGKLSKVNTAEKKIADPDATTVVQSVLNRQTTLDKFFEIPKRGVQDLRTPKRTTNKPISEKKDRKPNQSTPPATSASKENSAMKDCEKILDNLYGKDWRAKANAVLPTSEPRKQIVAKKDRGVQTERKPKLKSKSDARATVYSDSDDDSFDEFIQKRKPLLNSTTKPQPENKKVADSFINDEFESESNNSTYYTALTNPRVSKTPSVGVRKTTAISAAVERALMICDSESDEESNRGLVNKTTSNRRRLSYSDDESGSSTSEFDPGEVIPPKSTIKKGPGKTSRTVQGPPKSSATKFIDPVRQKSKSFLASLSANVPLADAHPDAKKYRTDYKKNKEDLCKYLFKMYNREIFDNKLPDDMTIEWNVRMRGTAGFCYNKTSVKTLGGVTRSSRLVLAQKILDTPDRLRDTLIHEMCHAAAWLINNVMDGHGPFWKGWAGKAIKRFPELPPISRCHDYKISTKFTYRCTSCSYSIGRHSKSLDIERKRCGYCFGKFELLVNRTTKSGRVQVQTPLRVKQPSGFALFVKDNYHSVKKTRRSIKHGEVMKILGQQFSAVKISKQANDAKNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-