Xcam001504.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783191.1:20743566-20746097[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-12 3.2e-10 40.0 0.0 1 40 18 58 18 60 0.95 2 2 4.7 1.1e+03 -0.0 0.3 28 41 411 424 411 428 0.86
Sequence Information
- Coding Sequence
- aTGCCGCGTGAACATAAACGTCAACTTGGGGCGCGAAATTACAAGAATTACACACCCGAAACGTTAGATGCTGCACTCACAGAAGTAAAAACTAAGAAACTCAGTTTACGCAAGGCAGCAGAAAAGTATGGAATACATTATAATACTCTCTGGGTGAAACTGAAAGAGAAACATACCCGACCATGTGGGAAACCAAGGATTTTTACCGATGAAGATGAAAATGGTTTTACTGCACATGTAATAGCAATATCGTCTTTTGGATTTCCGGTCACCGCTTGGGATTTGAGACTCATTGTTAAATCATATCTTGACCGTCAAGGGAGGACTGTACGAGTTTTCCAAGCCAATCTTCCTGGTAAAGACTGGTTAAAATCTTTCCTGAGATGTCATCAAGAACTGACTCAGCGAATTGCTCAAAACATCAGCCACGCGAGGGCCGCCACCGATGAAGAAATTGTTAATAACTTCTTTAACAACTTGGAAGAAGAACTCCGGGACATTCCACCCTCAAATATCTGGAACTACGATGAAACCAATTTGGTGGACGACCCAGGGAAGTCAACAATCATAACCAAACGAGGTACAAAATATCCGGAAAGAATCAGAAACGCATCTAAAGCGTGCACATCTATCATGGTGTGTGGAAATGCTGAGGGAAGACTGGCTCCTCTTTATATGAATTACAAATCTCATAAACTCTGGACAACATGGACAGAAGGCGGTCCCCCAGATGCAAGATACAATCGGACATCTTCAGGATGGTTCGATTACCAAATTTTCGAAGATTGGTTTGTAAATTTGTTGTTACCCATACTAAAACGTCAGAACGGACCTAAAGTAGTTATTGGTGATAACTTGAGTTCGCACTTAAATGTACACGTCATCCAAGAATGCCAAAGGAACAACGTTAAATTTATTGCACTGCCCCCTAATAGTACACACCTGCTTCAACTCCTCGATATAGCATACTTTCGGTCGATGAAGGAGAACTGGAGGAACACTTTAAGTGACTGGAAATCAACGAGTCATGGAAGTAGACTGTCCACCATCCCGAAGGACGAATTTCCAAAATTACTAAAACAACTTATGGAAAAGCTCGAAGTGAGAGGTCTAGAAAACTTAAAGTCGGGATTTCGAGAGGCTGGAATATAtccccttaagGGAAATGCTATTAAAGATGCTCTAGCTGACAGTTTCATACAACATCTGAATAAGACCCGAACAGAAACTGTTTCCACCAGGACAATCAGAAGAAGAAAACGAGTCAATTTGCCACCAGGCAGAAGTATCACCGCTGCTGATCTGCAGGATCCTGGAAATGATGCTCCTGATCCAGCGGTACCGAGCTGTTCAACTAACGGCGGAACAACAAGGAAGAATGCTGACAGTAGCTCAGATGAGGACAGCGTTGAATACCAGGAAAGCGGAGATAGTCCAGAAGAATTGTCCGATGATGAAGTGGATCAAGACCAAGAACATATAAGAGGTAACAGCTTCTCTAAAAAGGATAAAAGTGTCGGAAATTTCGTTTTGGTCAAATACGAAGGAAAAATGTATCCTGGTGAAATTATGAGCACGACAAAGGAAGGGGCAATCATTAATGCCATGACACCCTTCGGAAAACAATGGAAATGGCCATTGAATAGAGATGAAATTTTCTATCAAAACGAGAAAATCGTTATGAAAATTGAAGCACCACGAAAGCGAGGAAGAAGAGAAATTTTGGATGTTCCAGAAATCAGCTGTACTTAA
- Protein Sequence
- MPREHKRQLGARNYKNYTPETLDAALTEVKTKKLSLRKAAEKYGIHYNTLWVKLKEKHTRPCGKPRIFTDEDENGFTAHVIAISSFGFPVTAWDLRLIVKSYLDRQGRTVRVFQANLPGKDWLKSFLRCHQELTQRIAQNISHARAATDEEIVNNFFNNLEEELRDIPPSNIWNYDETNLVDDPGKSTIITKRGTKYPERIRNASKACTSIMVCGNAEGRLAPLYMNYKSHKLWTTWTEGGPPDARYNRTSSGWFDYQIFEDWFVNLLLPILKRQNGPKVVIGDNLSSHLNVHVIQECQRNNVKFIALPPNSTHLLQLLDIAYFRSMKENWRNTLSDWKSTSHGSRLSTIPKDEFPKLLKQLMEKLEVRGLENLKSGFREAGIYPLKGNAIKDALADSFIQHLNKTRTETVSTRTIRRRKRVNLPPGRSITAADLQDPGNDAPDPAVPSCSTNGGTTRKNADSSSDEDSVEYQESGDSPEELSDDEVDQDQEHIRGNSFSKKDKSVGNFVLVKYEGKMYPGEIMSTTKEGAIINAMTPFGKQWKWPLNRDEIFYQNEKIVMKIEAPRKRGRREILDVPEISCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537779;
- 90% Identity
- iTF_01537779;
- 80% Identity
- -