Xcam020408.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783200.1:9072226-9076518[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-11 6.2e-09 35.9 0.0 1 38 13 50 13 56 0.94 2 2 2.1e-06 0.00048 20.3 0.0 3 35 486 518 484 527 0.89
Sequence Information
- Coding Sequence
- aTGAGTTCAGTAGATGGTAAGAAAAGAGGGAAGTGGACTGAAGAAGACCTCCAGAAAGCTGTAGAGGCGATCACCACGAAAAAGATGTCCGATTATAAAGCAGCAGTGAAGTTTCGTATTCCTCGCAGAACTCTCCGTAGATACGTCAAATCGGATTCCAATGTTAAAGCTAAGTTGGGACGAAAGTTTACGCTTTCTAAGCAACAAAATACTGAGCTCTGTACCCGAATTGTACGACTAGCAGAAATAGGCTACCCAATAACCAGCAAGATATTGAGATTATGTGTATACAAatactgcaaacaaaatgacaTTAAGCATCAGTTTTCGGACGTAAAGCAAATTGCAAGCTACAAATGGGTACAACAATTCTTGAAAGCAAATCCCGTTGTTTCTATCAGAAAATCTCAAAATCTGAATCCTGCTAGGGCGCAGAAATTAAACAAATTCATTGTTGAAGATCACTTCGCAAAAATTAAAAGGCTCTTGGAAGATAATGACATTTTTGCGAAACCTGAAAGACTTTATAATATGGACGAGAAAGGTTGCAGACTCAATTTACACAAAGAACCAAAAGTTCTCGCCAAAAAAGGTGCACGAAGAGTTCATATTGTCGGCAACGAACACGGGGAAAACGTGACGATCGTCTCCTGTGCAAACGCAATAGGTTCAGCGATTCCTCCCATGATATTGTTCAAGGGCAAACGAATGAAAACAGAATTTTCAGATGATTTACCACCTGGTTCAGTTTGTCGTATGACTGAGAGAGGCTCCATGACATCGAAATGTTTCGTCGATTGGCTGCACCATTTTGGAAACTACAAATCTCCAGGTCGTTGCGCACTAATTTTTGATGGCGCTAAAAGCCACTTGGACTATGACATTGTGGAGACTGCTAATCAGTACGATATTGTATTGTACTGCCTTCCATCCAATACGACGCATGAGCTTCAGCCCCTCGATAAAGCAGTGTTTCGGTCATTCGAATATCATTGGGACCAGCAACTGACGCTATACTGGCATAATCATAGTGACAGAACATTAACTAAACAACGTTTTGGAAAAATTTTCACTCCAGTCTGGGATCAATCAATGACACCATCAAACATTAAATCAGGATTTAGAGCTACAGGTTTATATCCCTATGATCCGAACGCAATTCCTGAAGATGCATTCAAGCCAAGTACAGCATCTAACTTGCCAGTTCCTGACCAGACAGGACTTCAGACGAGATCGACCCCGACAGAGTCCTCGGTACCAGGACAAACTTCTCCACAGCCTGGAACTTCCGGTTTGTCAATTCGTCAGCAAACGAGAGCGCGTATTCTCTCCACGGACAAAATTGATCCCATTGAAACTGCTTTGATCAATTCTGACGAGGAAGATTCATCTGAAGACGAAGAGTTCGAAATAATGGATACTTCTTTGTCGAAGAAACGAAAACAATGGAGTGCGACTGATATGACAAATGCTATTGAATCAGTAAGGAACAGAAGTATGGGATATTTGGCCGCAGCAAAAGCATTTAAAGTTCCACGTACAACACTTTTTCGCCTTTGTAACACTGAAGGGCCTCCAGCAACTGTTAGTAAAACGAAATTGGGTAAAAAACCAGTTTTATCACCCGAGTTAGAAGAGGAACTAGTTCGGTATTTACTTCTCATGGATAAGAAGTTTTTTGGTCTGACGAGAAGGGATGTCCGATCTATGGCATTTCAACTTGCTAAGCGCAACAACATACCACATCCATTCTCCCTTTTGCGCGAAACTGCAGGAAAAGATTGGTTCTCTTCCTTTATGAAAAGGCATAAGGCTACATTAAGTTTGAGAAAGCCCACTGGAACTTCCCTAGCAAGAGCCATTGGTTTTAATCGTGAGAATGTCGCTGAGTTTTTCAACTTGTTAGAGGTGGTTATGACGAAGCAAAATTATGGCCCTCATCAAATATATAACGTAGATGAATCTGGATTGTCTATTGTGCAATCAAGATGTCCAGAAGTGGTATCGTTAAGAGGCAAAAGACAAGTAGGGGCTATTACGTCGGCAGAAAGAGGCTCTTTGATAACAATCGTTATGTGCATAAATGCTGCAGGTGATTTTGTACCGCCCATGATCATCTTTCCACGCAAAAAGTCAAGTAATCAGCTAAAAAAGGGAGCACCTCCAGGATCTTTGTTTGCTTTCCATCCATCCGGGTGGATTCAAACAGATTTATTTACACAATGGTTTCATCACTTCTTAGAAAAGACCAAACCTTCAGCAACAAATCCAGTATTGCTGGTGTTAGATGGCCATCATACTCACACCCGGAACCTAGACGTCCTTATAAGAGCCAAAGAAAACTTCGTTACAATTTTATGCTTACCACCACATACGACTCATAAGATGCAGCCCCTCGTTAAGACCGTCATGGGTGCATTAAAGACCTTTTATAATGAGGAAGTGAGGATCTTTATGAGAACGGAAAAACGCACGGTAACACATTTTGATATTTGCCAGTTATTAGGTAGGGCCTATCTCAAAGTGCAATCCGGCGAAAGAGCTGTTAAGGGATTTAGTGCCACTGGGATTTATCCTTTAAGAAGAAATATTTTCACGGATGAAGAATTTGCGATGGAAATGCAaaaagaaaatcaaaatttaTCGGAGGATATTGAACGTACAGACGAAGAACAGGATAACTTACCTAATGTTCATCCTAGTGACATTGTTCCAGTACCAGAATTAACAAAGAAGTCAGGAACTCGGGGAAGAAAATGTGGGAGTTCTAAAATAATTACGTCGACACCCAACAAGGAAGAACTAGAGAAATCAATTAATCGTTCACGACAGAAAGTTACTCGAaaagtattcgatggacctgaACCTAGTGGATTACAAACCAAGAAACGTAAAGTCACGAAAAAAATTGTCGCCTCTAGTTCCTCTGACTCACAATCTGAACCAGTTGTTGATGATTCATCTGATGAGGACCTGTCATTGAGCTGCTACACCAAAAAGCCAACTAGTGATGATGTGGAATGTATTTTTTGCCAAGAAAACTTTTCCATGAGCCGAAGTAGAGAAATATGGGTGATGTGTGTAATCTGCAATGGATGGGCTCACGAAGCATGCACCAGTGCAGAAAAAGATGTTTTTGTTTGCGATTTCTGCAATGCCTAa
- Protein Sequence
- MSSVDGKKRGKWTEEDLQKAVEAITTKKMSDYKAAVKFRIPRRTLRRYVKSDSNVKAKLGRKFTLSKQQNTELCTRIVRLAEIGYPITSKILRLCVYKYCKQNDIKHQFSDVKQIASYKWVQQFLKANPVVSIRKSQNLNPARAQKLNKFIVEDHFAKIKRLLEDNDIFAKPERLYNMDEKGCRLNLHKEPKVLAKKGARRVHIVGNEHGENVTIVSCANAIGSAIPPMILFKGKRMKTEFSDDLPPGSVCRMTERGSMTSKCFVDWLHHFGNYKSPGRCALIFDGAKSHLDYDIVETANQYDIVLYCLPSNTTHELQPLDKAVFRSFEYHWDQQLTLYWHNHSDRTLTKQRFGKIFTPVWDQSMTPSNIKSGFRATGLYPYDPNAIPEDAFKPSTASNLPVPDQTGLQTRSTPTESSVPGQTSPQPGTSGLSIRQQTRARILSTDKIDPIETALINSDEEDSSEDEEFEIMDTSLSKKRKQWSATDMTNAIESVRNRSMGYLAAAKAFKVPRTTLFRLCNTEGPPATVSKTKLGKKPVLSPELEEELVRYLLLMDKKFFGLTRRDVRSMAFQLAKRNNIPHPFSLLRETAGKDWFSSFMKRHKATLSLRKPTGTSLARAIGFNRENVAEFFNLLEVVMTKQNYGPHQIYNVDESGLSIVQSRCPEVVSLRGKRQVGAITSAERGSLITIVMCINAAGDFVPPMIIFPRKKSSNQLKKGAPPGSLFAFHPSGWIQTDLFTQWFHHFLEKTKPSATNPVLLVLDGHHTHTRNLDVLIRAKENFVTILCLPPHTTHKMQPLVKTVMGALKTFYNEEVRIFMRTEKRTVTHFDICQLLGRAYLKVQSGERAVKGFSATGIYPLRRNIFTDEEFAMEMQKENQNLSEDIERTDEEQDNLPNVHPSDIVPVPELTKKSGTRGRKCGSSKIITSTPNKEELEKSINRSRQKVTRKVFDGPEPSGLQTKKRKVTKKIVASSSSDSQSEPVVDDSSDEDLSLSCYTKKPTSDDVECIFCQENFSMSRSREIWVMCVICNGWAHEACTSAEKDVFVCDFCNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -