Xruf009869.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43730584-43733727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.026 2.1 10.5 0.8 2 23 68 89 67 89 0.96 2 13 0.00084 0.067 15.2 0.7 2 23 130 151 129 151 0.96 3 13 0.003 0.24 13.4 0.2 1 23 171 194 171 194 0.97 4 13 0.028 2.3 10.4 2.6 1 23 315 338 315 338 0.96 5 13 0.0025 0.2 13.7 1.1 1 23 353 376 353 376 0.95 6 13 0.026 2.1 10.5 0.7 1 23 421 443 421 443 0.98 7 13 0.28 23 7.2 0.1 1 23 480 503 480 503 0.96 8 13 0.022 1.8 10.7 0.2 1 23 548 571 548 571 0.96 9 13 0.029 2.3 10.3 0.3 1 23 616 639 616 639 0.96 10 13 0.71 58 6.0 4.4 1 23 719 742 719 742 0.96 11 13 0.21 17 7.6 0.3 2 21 922 941 921 942 0.93 12 13 0.17 14 7.9 3.3 2 23 947 969 946 969 0.94 13 13 0.14 12 8.2 2.1 3 19 1017 1033 1016 1038 0.92
Sequence Information
- Coding Sequence
- ATGACCAAGGATCCTATAGCAAAGTATCTGTTTGTGAAATATCAAGAAAAGTACAACTTGAAAAACGGCGTAGTGCTGTTAGGGAATATTAATAAAGTTAACAAGAGAAACTTCAAATTTGCCGTTATACCAAAGGATAAAACAGAAATAAGTCGCAGAAAAAGATGTAAATTAACGAAATTTATAGACAGAGAAAGACTACGTTGTTTGCTGTGTTTCAAACAATTTGAGAAAATTAAAAGTTTGCGTTCTCACATGGCGGTGCATTATCACATGGTGGAAAAAGACAGTAGTAGCGAAGAGAACAGCGACACGGAGACTGTCAGGTCAGAAACACTGAGCAGTCAGCAAGTGAGGGATGCAGAATTTGTCGACTTCCCGACTAAAAAATGCAGAATTTGTAGTAAAGTGTTCGAGTCTTTAAGTGCTCTATTTAACCACGTTGACAAGCATGTAGCGCACGAGAAATTGCTGTGGGCCCAAATGGTTAGCGGAGAAAGAATCAGGAAATTCACTTGCAGAGTCTGTAAACTAAAGTTTATTTCAAGTGCGTTATTGGAAGAGCACGTGAATTCTGAGCATCCTCCTGAGAAAGTCATTTCAAAGAATTCTTTGAAAGAAACCGTCACTTCGAATAACTTCTTAAATGATCACATGTATTCTGCACTTTCTGAGGACCAGGTAAATAGTAATGTTTACAAGGGATGTGACTCGAATTCTCGGAATGATCAAACTCAAGATCAGGAAGAAAGTGGTACTTTGAAGACCAGGGAAGACCAATTATTGTGCAACGAAAATCTAATTGCCTGTGACTTCTTAAACGAACTACTTAAATCTGCTCCGTCTCAGGAGAGTAACAATGTTTCTGTAGAAATTGACTCCTCGAATGACCACGTGGATTCTGCACCCCAACCAGATGATTCAGCAAATGAACCTTTTAAATTCAGATGTCACATTTGTAGAACACTTTTTTCGAGTTTGGTAAGGTTGAGGAAACATAAACTCGTTGAACATAATTTACAAACGAATCCGGTAAGACCTCGCAACACATCTGGATATACCTGTAGTTCTTGCAATAAAGCTTTTGGCGATTGGAGACAATTCAGAGAACATTTCTCTAGTGAGCATAACTGGGTTGATAACAGTATTAATGCAGTTTCCCGATATCGAACCTCCTTGGCTTCAGCTGCCGAAACTGAAGCTGAAACTGAAGCGGAAGTGATGCCGCCCTCTTTGCAGGAAAAATCTCAGCAGTTTCGTTATAAGTGCAAGAAATGCAACGTTGCATTTCTTACAGTTTCTGCGATGAAAGACCATATTAAAAACCATAATTCAACCACCAACCAACCAAAAAATTATACAACTGAAGGTAAGACATCGGTAGGAGACGATTCTTCTAATTCAACATTTAAAGAACCAAAAAACTTGTGTAGCAAATACATTTGTTCAGTTTGCAATAAGGGGGTTGGTGCTCATGAAGAGTTAGTTGACCACCTGAGGTTATCTCATGATGGACTGAAGTGCAGTTGTCTTATTTGTGAAAAAGCATCATTAAAAGTTCCGATAACTGTAGGCAAAACATCGAAAGGGCAAAATTCTTCTAAAGCAGCATTTAAGAAACTGGAAAGCTTGTGCAGCAAATACATTTGTTCAGTTTGCAAGAAGGGGGTTGGTACTCATGAAGAGTTAGTTGACCATCTGAGGTTATCTCATGATGGACTGAAGTGCAGTTGTCTTATTTGCGAAAAAGCATCATTAAAAGTTCCGACAACTGCAGGCAAAACATCGAAAGGGCAAAATTCTTCTAATGCAGCATTTAAGAAACCGGAGAGCTTGTGTagcaaattcatttgttcagtTTGCAAGAAGGGAGTTGGTACTCATGAAGAGTTAGTCGATCATTTGAGATTATCTCATGATCGAATGGTGTGCAGGTGTCTTATTTGCGAAAGTGCATCATTAAAAGTTGCGACGACTTCGAAGGAACTGGAAAATCCCGTTTCTGCAACATATATATTAGACGCTCAAAATGCTAAAGAAGAAGTCCAACCAAAGAAAAGTATTGTCTCTGTAATTCACAGCATCCTACAACcgaaaaataaattagttaCGAATAAAAACAAGGGCCCTTTGGACACGAATAAATTAGGAAATTACATCTGCACAGTTTGCAAGCAGAGGTTtagatatttttgtttttatgttgAACATATGTCTAAGGTCCATGTTACTCAAAGTTCAGAATCTACTATACCGAACAAAGATAATTCTATGCTTAAACAACTGCTCCCACCGACACCGATAAACCAAGTTCCCGTAATTGCATCCACTATCGAAAAACATAAAATTCAAGAGAAACTTTCACCCCTACTAGCAAAATTAGTTAATTCTGCACTGACCCCAAACATTAGTGCTGCAGCAATTGATACTAATGAAACAATGccaaataatagtaataatgaaAAGTCTGGGCAAAGTAAACAAAGTGAATTCGTAGTTTCAATTGATAATGATGAATCTGTGTCTGAGTTTACCATAATAACTAAAGGAGATAATGTAGTAGTAATTCCGAGGCCCGAGAATCCCCCAAAAAATGCTGCTTCTAGTAGCGCAGCACAGCCAGAAGAATATGTATTGGTGGTTGTTAACGAAGATGAAGAAAAATCCCAACAATCCACGCAAGAAAAACCGAAAATCTTCGTTAAAAATTTGAGCGAAATGGTCGCTCCGGAATCCAACGAGTTTACTGACGATGAAACATGGAGATGTACGGACTGCAATAAATTGTTCTTAACAAAGTCCGAGTTCCTAGAGCATGCTAGACAGTCCAGAATGATAAAATGCACCCAGTGTAACTATTTCACTTGTAACACTTCCTTATTATCGAAACATTATTATATCGATCATAACAATCAATTCTATAAGTGCTGTTATTGCGACTTTGCAAATAAATGCAAAAAACAATACGTGCTTCATCTCAAATCTCACGAATTCCCTCCAGGACAATTAGTAACAATCGCTGGCTTTGAAAAAGATGTTCCAGTTGATTGCGGAATTTGCAATGTctctttttcaaattttaaaacgtTGCAAAACCACTGTGATTCAGATCATCAAGACTTCCCACACTTGAATGCGAAATAA
- Protein Sequence
- MTKDPIAKYLFVKYQEKYNLKNGVVLLGNINKVNKRNFKFAVIPKDKTEISRRKRCKLTKFIDRERLRCLLCFKQFEKIKSLRSHMAVHYHMVEKDSSSEENSDTETVRSETLSSQQVRDAEFVDFPTKKCRICSKVFESLSALFNHVDKHVAHEKLLWAQMVSGERIRKFTCRVCKLKFISSALLEEHVNSEHPPEKVISKNSLKETVTSNNFLNDHMYSALSEDQVNSNVYKGCDSNSRNDQTQDQEESGTLKTREDQLLCNENLIACDFLNELLKSAPSQESNNVSVEIDSSNDHVDSAPQPDDSANEPFKFRCHICRTLFSSLVRLRKHKLVEHNLQTNPVRPRNTSGYTCSSCNKAFGDWRQFREHFSSEHNWVDNSINAVSRYRTSLASAAETEAETEAEVMPPSLQEKSQQFRYKCKKCNVAFLTVSAMKDHIKNHNSTTNQPKNYTTEGKTSVGDDSSNSTFKEPKNLCSKYICSVCNKGVGAHEELVDHLRLSHDGLKCSCLICEKASLKVPITVGKTSKGQNSSKAAFKKLESLCSKYICSVCKKGVGTHEELVDHLRLSHDGLKCSCLICEKASLKVPTTAGKTSKGQNSSNAAFKKPESLCSKFICSVCKKGVGTHEELVDHLRLSHDRMVCRCLICESASLKVATTSKELENPVSATYILDAQNAKEEVQPKKSIVSVIHSILQPKNKLVTNKNKGPLDTNKLGNYICTVCKQRFRYFCFYVEHMSKVHVTQSSESTIPNKDNSMLKQLLPPTPINQVPVIASTIEKHKIQEKLSPLLAKLVNSALTPNISAAAIDTNETMPNNSNNEKSGQSKQSEFVVSIDNDESVSEFTIITKGDNVVVIPRPENPPKNAASSSAAQPEEYVLVVVNEDEEKSQQSTQEKPKIFVKNLSEMVAPESNEFTDDETWRCTDCNKLFLTKSEFLEHARQSRMIKCTQCNYFTCNTSLLSKHYYIDHNNQFYKCCYCDFANKCKKQYVLHLKSHEFPPGQLVTIAGFEKDVPVDCGICNVSFSNFKTLQNHCDSDHQDFPHLNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -