Xruf027480.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:29152136-29175022[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.19 15 7.8 0.4 1 21 236 256 236 259 0.88 2 16 1.1e-05 0.00089 21.1 0.1 1 23 306 329 306 329 0.97 3 16 0.17 14 7.9 0.1 3 20 337 354 336 356 0.94 4 16 6.2 5e+02 3.0 0.9 1 23 367 389 367 389 0.82 5 16 0.0013 0.11 14.6 4.6 1 23 449 472 449 472 0.96 6 16 0.071 5.7 9.1 2.8 2 23 479 501 478 501 0.95 7 16 0.019 1.5 10.9 5.0 1 21 616 636 616 637 0.95 8 16 0.0014 0.11 14.5 2.2 2 23 649 671 648 671 0.94 9 16 0.26 21 7.3 1.1 1 23 674 697 674 697 0.95 10 16 0.05 4 9.6 0.5 3 23 704 724 702 725 0.94 11 16 0.34 27 7.0 0.1 1 23 728 751 728 751 0.96 12 16 2.2 1.7e+02 4.5 0.1 2 23 758 780 757 780 0.93 13 16 0.27 22 7.3 0.9 2 23 789 811 788 811 0.94 14 16 0.18 15 7.9 0.1 3 23 818 839 817 839 0.94 15 16 2.9 2.3e+02 4.1 0.1 2 23 1004 1026 1003 1026 0.93 16 16 0.52 42 6.4 0.9 1 23 1039 1061 1039 1061 0.96
Sequence Information
- Coding Sequence
- atgattgaTTTATGCTCTATTTTGTTACAGGTATCGCCAATTTGCTTGCTACCAGACACCATTTGTTCGGAATGTTTAGAAAACGTCGACAATTTTTATAGTTTCATAAAAAATTGTCTGCAAAACATCATAGTGTTAGAAGCACAATATGACATTACGGATTCTTGTCTAAAAACGAAACGCAAGCACGAGAAAAGTTCGCAATCGGATTTTGCCGTTTTGAAGTTTGATAAAAATATTCAGACAGATGATGACGAAAATGAACAGAGGTTGGGACTGGTTTGTTATGAGATTGATTCGGATACAAATTCTGAGTGTGACGGGAATTTTAATGAAGGGAAGGTTATTCTCGCCCCGAGAAACCGCGGTAGTTCGAAAGATTTAATAAGCGAGATAACTTTGCGAAAAAGTTTGAAGAGGAAGTACGACTCGGGGGCGGACGATCTAATTTTGACGCGTaaaccgaaaatattcaaatcTGACACTAATAGAAGGAAAAGTAGGCAACCAAAAAAATTAGAATTTATCGGCGAACCTTCGATTGTGAATTTCGATACCTTGGAGAAATTATGCGagcaaatggagaaaaataagaCATTAGATTTAAGCGAAGTCGAGAAATTGGGGGAGTATACCGAAGAAGATAAACAGAACGCATTACAACAAGTCCAAATGGAAATAAGCAACAGTTTGTTGCCTCCGGTTCATATTTGTTTGCTGTGCGAACAAAAATTTACGAACGCAGTAGCGTTATCTAGTCACGTTTTTGATATGCACGGCATAGATTTGACGCAAAGCACCTCTAGTCctgaaaagaagaagaaagtcCCTGAATTGCTTAAGATTACCGATGTTGCGATTAAAACGGAAACAATTGACAATCAAGCCGAGGAAGCTCCCACGTTACAACCTTCGTTTATTTGTCCCATCTGCCCGGCGATGTTCTCGAATCGATCGGATCTATTCATGCATTTACGGGTTAAACATCCGATGGAAGCTTCCGTTCTGTGCGGACTCTGTCTGCAGCGTTTCACCACGTACGCCAATTTAATAACTCATTTAGAGAATTGTAAGCAACAGAACCGAATAACATACAAGTATGTTTGCAAGATTTGTAATTATAGCGACGATAACTCGAAATGCGTCGAAAATCATGTCGTTGTCCACGATTTCGTGCTTATGTTCTGCAAGAAACAATTGAAGATGTTCGATCCGAGTGATTACATAGAAATCAACCCAAATTGCGAAGGAATGTCTAAATTATTCAACTGCACGGAGTGTGAAATGGGCGGTTTTGCCACTTTTAGAGAATTCAGTACTCACCGCCGCAGCCAACACCAAATCTTCCACTGCGATTTATGCAATAAGTTCTATGGACGTAATTCGCATTTGTGGAAGCACGTCAATCGATTACACAAGGGACACCCCAGTATTACATGTCAATTGTGCTACAAGACTAGCGCCAGCAAGTATCACTTATCGCAACACTTCAATAAGATACATAACAGCTCTAAACAGCAGCCTGTCGTTAAAAATAATGattCTTGGTGGAATAATAGAAATACAAGTACAAACGAGGATTTTATGTCCCAAAAATTCAGGGCGTTCGATTTTCAGTCTGTCCGGCAAAGTTTTATGCGGCAAGAAATACTAGAAAGGGAGCGCGATGAAGGTCCCTTGTTCCCTAACTCGGATCCCGATGAAGACGAACAACTGTCGAAGAACACGAGTGAAGAGGAAGACTCGAAACCAAATGATACCATTCCGCCAAAAGAAATCGATTCGTCCAGCGATCTTTATACTAATATTATCACGAACTACACGCCACCTAGGAACGAAGGCGAATTCAAGTGTCCGAAATGTTTTAAAGGCTTCCACAAGAAGACACTCCTGAAAAAACACAAGAAGAACTGTCGGCCGCGGCTTCAAAAAGACCTGTTAACTCGCTGCAAAACCTGCTCCCGGATCTTCAAGGACCGTCAAAGCCTCACGAAGCACCTCATCAACTATCATTCCGAATATAATTGTGAAATTTGCGGCCAAAAAGTGCAGAGCAAATGCGAGATAGTCTCTCACATCCGTTTTTCGCATCCGGATTGCCATTTATTCTGCAACCAGTGCGGAAATATCCTCCGAAATAGGGCGGATCTAGCGGAGCATCAGCAAGAGCACCACGATTCCTTCGTTTGTCAATTCTGCGGAGACGCTTTGCCCACGAAAATCAAACTCAAAATGCACATTTTGAGTTTGCATCGTAAGATTTTGTCGTTGAGTTGCGGGATTTGCTTAAAATTATTCGAAACTCAGTATATCCTGAAGGATCACGTGAATTTGGTGCATAGGGACAGTCTAACCCCACTCACTTCTTGCACTGTTTGCGGAAAAAATTACGGAAGCAAGTGGAAGACTTACGATCATTTGAATAAGTCACATGGTCGCATTTTTAAAGCTTGCAAAGCGTGCTTAAAAGTATTTAATAACGAAGAAGAACTCTCTTTGCACTATAGTTCAGTGCACGATCAACAAATAAAGAAGGAAGAACCCTCGCAACAAAATAATTCCGTGTTGGAAGACGAAAATGTGAAAAAAGAGCTGCAAAATTCTGTCGCTTATGAAAGTGACTATGAAAATAATTGGGGGGGCGCGAGCGACGATGGTTCCAATGAAGAATTTGAAGATGAAACTTTTAGTGAAGCGCAAGAAGCAAAAATTTCTTTATTAGAGAAACGGTTATTGGGGAAAGCTTTGCCGATTAAAGTCGAAAAAGCAAACGTAAAagacaaaaaatttaacaatgtaataaacaattttaagaCTGAAATTTTGGAAGAATCGTGTGAGATGAACTCGTCGTCTTCTCACAGCCAAACATTACAAAACAGTTCAAAACGAACTGTTTATGTAAACAGTAACGATCCTTCCTTGTGTGAAATTTGTTTGAAGACTTGGCCGGCGAAGAAACACCTATGGCAACATTATATTCGGTGTCACAAAACTGTAGCGGCAACAGTTTGCGGGATTTGTCTTAAAACGAACCCTGATTACGAAACACTGCAATTACACTTACGGGAGAACCATCCGACGTTGCTGCATGGCCAAGGTTTCGGATCGAACTTTATTTGTAGGATTTGCGGCCGTTATCACAACGCCAGCTCGAAGTTGAAGCTGCATATGGCGATTCATGAGAATTTCAATTGGAGCATTTTAGAGGACGTCAAAATTGGGAGTATCGGTACGTCGGAGGGCAAACTGGTCTGTAAGAATGAAGGGCAGAGTAATGGGTACGCAGATGAGAGCAAGGAGATGTTAAATAACGAGGATATTAATTACGAAAGTATGATTGAACAGGTTGAGTGCACTTCGGAATCGGAATGTGAAGATTCGGATAATGAGAATGGTCACGTTAACTCGAAACAAGAAGATACATCCTCGGAAGAAGATGATGAGGATGATGATGAGAGTGATCCAGAATCTGTCGTGTCTGAAAATTCTTTAGAAACGCGGATGTTGCATAATATGTTGAACGAAAAGCCGAAGCAAACGGTGCCGGTGGTGCCCGAGGCTGAAACGAAGATAAAAGTGGAGGTTTATTCTACTTCTGAGGAAGAGAGCGAGGATTCGTCTAATTCAACGGGAGAGACATATTCTTCTGAAGAAGTGGCGATCAACGGGAAATCATCGGAAAGTCTTTTAGGCGGTCAGAAACCGAGTGAATTGGATTCGGCCATTCGTTCAATCAGTTATCATCAAGTGGATAATGTAGACGACGAGCTGGATAGTGACTTTTGTGAAATTCAGGTTCAAAATTTGAACGAAAATGAAATTGAAACCGCGGTCGACAGTATTCTGTAA
- Protein Sequence
- MIDLCSILLQVSPICLLPDTICSECLENVDNFYSFIKNCLQNIIVLEAQYDITDSCLKTKRKHEKSSQSDFAVLKFDKNIQTDDDENEQRLGLVCYEIDSDTNSECDGNFNEGKVILAPRNRGSSKDLISEITLRKSLKRKYDSGADDLILTRKPKIFKSDTNRRKSRQPKKLEFIGEPSIVNFDTLEKLCEQMEKNKTLDLSEVEKLGEYTEEDKQNALQQVQMEISNSLLPPVHICLLCEQKFTNAVALSSHVFDMHGIDLTQSTSSPEKKKKVPELLKITDVAIKTETIDNQAEEAPTLQPSFICPICPAMFSNRSDLFMHLRVKHPMEASVLCGLCLQRFTTYANLITHLENCKQQNRITYKYVCKICNYSDDNSKCVENHVVVHDFVLMFCKKQLKMFDPSDYIEINPNCEGMSKLFNCTECEMGGFATFREFSTHRRSQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHNSSKQQPVVKNNDSWWNNRNTSTNEDFMSQKFRAFDFQSVRQSFMRQEILERERDEGPLFPNSDPDEDEQLSKNTSEEEDSKPNDTIPPKEIDSSSDLYTNIITNYTPPRNEGEFKCPKCFKGFHKKTLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLTKHLINYHSEYNCEICGQKVQSKCEIVSHIRFSHPDCHLFCNQCGNILRNRADLAEHQQEHHDSFVCQFCGDALPTKIKLKMHILSLHRKILSLSCGICLKLFETQYILKDHVNLVHRDSLTPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKACKACLKVFNNEEELSLHYSSVHDQQIKKEEPSQQNNSVLEDENVKKELQNSVAYESDYENNWGGASDDGSNEEFEDETFSEAQEAKISLLEKRLLGKALPIKVEKANVKDKKFNNVINNFKTEILEESCEMNSSSSHSQTLQNSSKRTVYVNSNDPSLCEICLKTWPAKKHLWQHYIRCHKTVAATVCGICLKTNPDYETLQLHLRENHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFNWSILEDVKIGSIGTSEGKLVCKNEGQSNGYADESKEMLNNEDINYESMIEQVECTSESECEDSDNENGHVNSKQEDTSSEEDDEDDDESDPESVVSENSLETRMLHNMLNEKPKQTVPVVPEAETKIKVEVYSTSEEESEDSSNSTGETYSSEEVAINGKSSESLLGGQKPSELDSAIRSISYHQVDNVDDELDSDFCEIQVQNLNENEIETAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -