Xruf009871.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43740068-43747893[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.076 6.1 9.0 1.3 5 23 87 106 84 106 0.94 2 16 0.015 1.2 11.2 0.6 2 23 115 137 114 137 0.94 3 16 0.00055 0.044 15.8 0.7 3 23 165 185 164 185 0.99 4 16 0.18 15 7.8 0.1 2 23 191 211 191 211 0.91 5 16 0.00012 0.0099 17.8 1.0 1 23 216 239 216 239 0.97 6 16 1.6 1.3e+02 4.8 0.4 1 12 244 255 244 263 0.72 7 16 4.9 3.9e+02 3.4 0.4 1 10 275 284 275 298 0.90 8 16 0.47 38 6.5 0.7 3 23 378 401 377 401 0.90 9 16 0.025 2 10.6 0.7 2 23 410 432 409 432 0.95 10 16 0.042 3.3 9.9 1.9 1 23 434 456 434 456 0.98 11 16 3.9 3.1e+02 3.7 0.1 2 12 470 480 469 490 0.81 12 16 2.3e-05 0.0018 20.1 0.5 1 23 495 518 495 518 0.97 13 16 1 84 5.5 0.8 1 12 523 534 523 542 0.77 14 16 7.9 6.4e+02 2.7 1.1 1 10 554 563 554 577 0.88 15 16 0.00047 0.038 16.0 0.7 1 23 582 604 582 604 0.97 16 16 0.13 10 8.3 0.9 5 23 613 631 610 631 0.95
Sequence Information
- Coding Sequence
- ATGAACGCTATTCATAATGCTGCGCTAGGAAGGTTTGACGTTGTTATACTTAAGTCGGAAGAAAACTTCGGTTTTGACGAAAAAGGAATTAAAAAAGATTCTAAAATTGATCACCCCGAGTGTTACGATTCTTTTGATACTTCTGAAGAATTTGACCAACATGCATCGATTCATAAAGATTATTTGCCGGGATCAGAGTCTAAGACACTTACAACTACTTATACTTTTGAAAGTGAGAAGCCGACTTCCTTATGTATTTATTGCAAGAAGATATTTAATGTTCCCTTGCTTTTGCACAAGCATTTAAGAAAGGAGCACGCAGATATACGGCAACCAAAGCTGCGCTGTTTCTTCTGCAAAATGGATTTCCCTGATCAGATTGCTTTGCGTAAACACTTGTTAAATCAACACAGGTTCTTCTGCAGGATTTGTAAAGAAGAATTCAAAACTCTCGAGGAGAGAAAATGTCACGATCGGACGCATAATGAACTATGCCCAATTTGCAAGAAGAATATTTCTTTTAGGTACGGTTTAAAGGAGCACATGAAGACCCACACGGGCAGTTCCGAAACTTGTAACATTTGTGGAAAAGTTATTTCTTCTTTGGCATTTGCGTCTCATTTGCGACTACACAGAGgaataaaatataaatgtgaGATATGCACGAACGACTATAATAGCAAAAACAACTTGAAGCGGCACATAGAAAAGGTGCACCTTAATGAAACTTTTTTGTGCAATGTTTGCGGAAAGTCCGTGCGAAAGTTACGTGAACATAGCAAGATACATTTAGAAAAACCTGATCTTAAGGATAGAAAGAAATTCGAGTGTCCAATTTGTGCTAAAGAGTTTTTGAATAGTAAGTCTGCGAAAGTTTGCCTCAAAAGGCACCAAGGAATCAAGGAGTGTCATAAGAAAGTGATGGTATTTTTACCAGAAACAAACTTCAGTGATGAtgaaaaagaaataaagaaagatGCGGAAAATGACGCAAAAAATGATAGCTTCAAATGTTACGATTCTTTTGTTACAACCGAAGAATTTGACCAAAATATATTGTTTGATACAGAAGATTTGCCGCCCTCAGAGTCCAAGAAAATGAAAACTAAGTTCGAAAGCAAGAAGCCGACTTGCTTATGCATTTATTGCAATGAGGCATATAATATTCCCTTGCTTTTGCAGAAGCATTTAAAAAAGGAACATGCGGACATACAGGCACCAAAACTGCGCTGTTTGTTCTGCAGCTTGGACTTTACTGAGCAGACCGGTTTGCGTAGACATTTGTTGAGCCAACATAGGTTCGTGTGCATGATTTGTAAAGAACAGTTTACAACTCTTAAAGAAAGGAAATTGCATAATAAGACACACAGCGAGgAACACATGAAGAACCACAGAGACAGAAACAAGACTTGTAACATTTGTGGCGAAGTAGTTTCTTCTTTGGTATTCGGAAGTCACATGGAACAGCACAGAGGAATGAAATACAGTTGTGAGATTTGCGCAAAAGGCTTCGATAATAAGAAAAACATGAACCGGCACATACAAAGGATCCACGATAACAAAACTTATTTGTGCAACATTTGTGGAAAATCCGTAAAAAGCATGCTCCACCATAAAAAAGTACATTTAGCCAAACCCGATGTTGACGATAGAAAGAAATTTCACTGTCCGCTGTGCGACAAAGAATATTTAAACAGCAAGACGGTGAAAATTTGCCTCAAAAGACATCAGGGAATCAAGGATTATGCATGTGACGAGTGcgacaaaaaattttattacgtAAAGAGTTTAGTTGTTCACAAACGGTTACACTCTGGTGAAAAACCCTATCCTTGCCATTGTGGCAGGAGCTTCTACAGTCCCCAGATTCTTTACAAACATCAACTGAGCCATGGAATTGACACTAGAGCACTGAAATACGAGTTTAAATCCGAGGTGAAATCCGAGGTGAAATCAGAGGTGAAATCTGAAAGTAGTGATTCATTGCAACTAGTTGGTTGGCCAGAAACAGATTAA
- Protein Sequence
- MNAIHNAALGRFDVVILKSEENFGFDEKGIKKDSKIDHPECYDSFDTSEEFDQHASIHKDYLPGSESKTLTTTYTFESEKPTSLCIYCKKIFNVPLLLHKHLRKEHADIRQPKLRCFFCKMDFPDQIALRKHLLNQHRFFCRICKEEFKTLEERKCHDRTHNELCPICKKNISFRYGLKEHMKTHTGSSETCNICGKVISSLAFASHLRLHRGIKYKCEICTNDYNSKNNLKRHIEKVHLNETFLCNVCGKSVRKLREHSKIHLEKPDLKDRKKFECPICAKEFLNSKSAKVCLKRHQGIKECHKKVMVFLPETNFSDDEKEIKKDAENDAKNDSFKCYDSFVTTEEFDQNILFDTEDLPPSESKKMKTKFESKKPTCLCIYCNEAYNIPLLLQKHLKKEHADIQAPKLRCLFCSLDFTEQTGLRRHLLSQHRFVCMICKEQFTTLKERKLHNKTHSEEHMKNHRDRNKTCNICGEVVSSLVFGSHMEQHRGMKYSCEICAKGFDNKKNMNRHIQRIHDNKTYLCNICGKSVKSMLHHKKVHLAKPDVDDRKKFHCPLCDKEYLNSKTVKICLKRHQGIKDYACDECDKKFYYVKSLVVHKRLHSGEKPYPCHCGRSFYSPQILYKHQLSHGIDTRALKYEFKSEVKSEVKSEVKSESSDSLQLVGWPETD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -