Xruf009884.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43810446-43811819[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 9.7 8.4 0.8 3 23 104 126 102 126 0.91 2 12 0.59 48 6.2 1.0 3 23 136 157 134 157 0.95 3 12 0.15 12 8.1 0.3 2 23 160 181 160 181 0.97 4 12 0.001 0.085 14.9 0.3 1 23 183 206 183 206 0.95 5 12 7.8e-05 0.0063 18.4 0.4 2 23 229 251 228 251 0.96 6 12 0.058 4.6 9.4 1.7 3 23 261 282 259 282 0.96 7 12 0.0022 0.17 13.9 1.2 1 23 284 306 284 306 0.98 8 12 0.0026 0.21 13.6 2.1 1 23 308 330 308 330 0.99 9 12 0.013 1.1 11.4 1.1 3 23 341 358 340 358 0.91 10 12 1.8 1.4e+02 4.7 0.4 1 10 367 376 367 376 0.88 11 12 3e-05 0.0024 19.8 0.6 1 23 395 417 395 417 0.98 12 12 0.12 9.5 8.4 8.8 1 23 423 445 423 445 0.98
Sequence Information
- Coding Sequence
- ATGTGCTATGACGATTTTGGAACTGAAGAAGACTTGAAAGAACATGAATCCTTCCACAATGAAATAGAAATTACGTCGGATATAGTGATTCCGGATCATGCTACTTTAGAAAGTGAAAGGGTTTATGGAGATACTGAAACTACAAAATGTATAGATACTTTAGAATCTGggaaagaaattgaagaaaaaggAATGGAATCAGAAAAGGTCACAGAATTATTGAGTGTACAAGGTGACAGAAAGTATAAGTTAGGAGAGAAACAGGAAAAGAGGAGTTATGAAAAATTTTTTACTGATAAAATAACCTCTTGCTGCATTTACTGTGATGACACTTTTATTGCACCTTCGAAGTTAAATCAACACATTAAAGAACAACATCCTTTAATACCGAAACCACGTTATGGTTGCTTTTCTTGTAAAGAAACATTCGCTGCATCGAAGGTGTTATGTACACATATTTTACGAGCTCATAGAAATGTTTGTTTGATATGTCTTAAAGAGTTTCCAAGTAGGCGAGAGAAATTGGAACATGTCAAAACTCACAAATATGCTTGTAATATTTGTAATATATTTTACAATAGCTCGATGTTACTAGCAAAGCACTTAAAAGAGACACATCCAAAAATGTTATGTCCTCGCAATGAACCTCAAAAGACTCTTGAGGATGGTGATGAGATAACTTCGTATTGTCTTTATTGTGACCAAACTTTTATTTCGCCAAACTTGTTACAACAACACCTGAAAAAAATTCACTCTTCTCTTATGAAACCACGATTTGGTTGTTTCGTGTGCAAAGAGTCATTCTGCGAGAAAATAGTTCTTCGTAATCATATTTTAAGGACACACAAATTTGTATGCGAGGTATGTAAGAAGCAATTTTCTAGTGGAGAAGAAAAACGGGAGCATAGGAAAACTCACAAATATACTTGCGAGATTTGTAGTATAAGCTGTAACCGAATGGATCGACTGAGGGAGCATCTCAAAAGTCATACTGGAAAGAAAGTAGTAAAGAAAGAAATGTGTGGTGAATGCGGAAAATTTTTCACCGATCTTAAAGTGCACTTGCGCACGCACACAAAATTATTAGCCCGTAGAAAATTTCAGTGTCCCGAGTGCAATCGAATATATCTGTCAGCGAACGGGCCTAAACTATGCATGAATCGCCATAAGGGCACAAAAGGATTTGAATGTGACGAATGCGGCAAGAAATTTTTCTACGAGAGGTCTCTTGCAGTTCACAAAAGAATTCACACCGGGGAAAAACCTTACCATTGCAGTCATTGCGAGAGATGTTTTTATACTAACCAAATTTTGTATAAACACATGTTGAGCCATGGAATTGACACTCGAGCAAGAGAAAAATCTATAGTTTAA
- Protein Sequence
- MCYDDFGTEEDLKEHESFHNEIEITSDIVIPDHATLESERVYGDTETTKCIDTLESGKEIEEKGMESEKVTELLSVQGDRKYKLGEKQEKRSYEKFFTDKITSCCIYCDDTFIAPSKLNQHIKEQHPLIPKPRYGCFSCKETFAASKVLCTHILRAHRNVCLICLKEFPSRREKLEHVKTHKYACNICNIFYNSSMLLAKHLKETHPKMLCPRNEPQKTLEDGDEITSYCLYCDQTFISPNLLQQHLKKIHSSLMKPRFGCFVCKESFCEKIVLRNHILRTHKFVCEVCKKQFSSGEEKREHRKTHKYTCEICSISCNRMDRLREHLKSHTGKKVVKKEMCGECGKFFTDLKVHLRTHTKLLARRKFQCPECNRIYLSANGPKLCMNRHKGTKGFECDECGKKFFYERSLAVHKRIHTGEKPYHCSHCERCFYTNQILYKHMLSHGIDTRAREKSIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537108;
- 90% Identity
- iTF_01537108;
- 80% Identity
- -