Xruf009878.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43777555-43779327[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 1.8 10.7 0.3 1 20 25 44 25 46 0.93 2 13 2.2 1.8e+02 4.4 0.8 1 20 91 110 91 111 0.87 3 13 0.16 13 8.1 0.4 1 23 143 165 143 165 0.95 4 13 0.12 10 8.4 1.2 5 23 244 263 242 263 0.94 5 13 0.0016 0.13 14.3 2.7 1 23 320 343 320 343 0.96 6 13 0.11 8.8 8.5 0.1 2 23 365 387 364 387 0.87 7 13 3 2.4e+02 4.0 0.4 3 23 397 418 395 418 0.94 8 13 0.00011 0.0091 17.9 1.7 1 23 420 442 420 442 0.98 9 13 3.9e-07 3.2e-05 25.7 0.6 1 23 444 466 444 466 0.99 10 13 0.2 16 7.7 0.6 2 23 477 495 476 495 0.93 11 13 1.4 1.1e+02 5.1 0.1 1 16 504 519 504 521 0.78 12 13 0.00014 0.012 17.6 0.7 1 23 532 554 532 554 0.98 13 13 0.073 5.9 9.1 2.5 1 23 560 582 560 582 0.97
Sequence Information
- Coding Sequence
- ATGACCATTTTGAAATTATCTTATGGAGATGATAGTTCTGTAACCATCATGAACATAGTGGAAAATAAGAAGCATATATGCAAAGGCTGCAACGGAAAATTCACTCGTCTTACTGCTTTCGAGAAACATGTCCTAGGGTGTAGCAGAATTGAAAGTGAGAATGATGAAGGTCAGTTGACCGAATCAGACGATGATTCTGACTATCACAATGGTGATGATGAAAGCAGCAATGATAACACCGATGGTGAAACTGAACAAGATTTCGTCGTTCATACTTGCGAGAATTGTTATAAACTGTTCACCGACTATACCATATATCAAAACCACATCATTGATTgttcaaaaaaaaatagaaacaatGGTTTTGATGCAAAAGGCTTAAAGAGTGGTGAGAAATTGAAAGTCAAAGCGGAggaagaaaataaatttgtttgttCTACGTGTTATGATGATTTTAAAACTGAAGAAGACTTGAAAATCCACGAATCCCTTCACAGGGAAGTAGAAATTTCAGCTGCTTTAGTGTGTCATAATCATGGGACTTTGAAAGATAAAATGGTTCATGGAGATGCTGAAACATCAGGAAATATAGACATTGAAGGAGAAGAAAATGAGAGGATTACAGAATTTATCAGTGTAGAAGGCAACACAAAGTTGAGTTTGACAGAAAGACGGGAGAAGaggaattatgaaaaattttttACTGGTGAAGTAACTTCTTGGTGCATTTATTGTGATGACACTTTTACTACGCCTTTGTTGTTAAATCAACACATCAAAAAATGTCATCCTTCAATTAAGAAACCACGTTTTGGCTGTATTTCTTGTAAAGAAACAAACTGTGGCCCAAAAGGTTTAATCAAACATTATTTAACACAACATAGAAATGTTTGTTTTGTATGCTTGGAAGAGTTTCCTAGTACACAAGCGAAACTGGACCACGGAAAGACTCACAGATATACATGTAAAATTTGCAACGCGTCTTATACTAGATTGTGTCAGCTTCTGCTTCACTTAAAAGAGAAACATCAAAGAATATACACCCGTGATGAACCACAAAAAGTTATTGATAACAGTGATGAGATAACTTCATATTGCGTCTATTGTGACCAAACATTTATTTCCCCACAACTGCTACCACAGCATTTGGATGAAATTCACCCTTCTATCATGAATCCGCGTTTTGGTTGTTTCTTGTGCAAAGAATCATACTCCGCAAAAATTATTCTTCGTAATCATATTTTAAGGCAACACAAATTCGTTTGCAGCACATGTAATAAGCAGTTTTCCAGTGAAGAAGAGAAACGGGAACACATGAAAACTCACAGATATACTTGCGAGGTTTGTGGCAGAAGTTACAGCAGATTATCAAACCTCAGTTCACATCTTAAAATTCATGTTGGTAAGAAAGTGAAGGCGAAGAAGACAATGTGTGGTGACTGCGGAATGTTTTTTGTTAACGTTAAAGCTCACATGAAGACGCATAAAGAATTGAGCACCCGTGAAAAATTTCCATGCCCTGAGTGCAACCAAATATTCTTATCTGCTTCTAGACTTAAAAGATGCATGGACCGTCACAAAGGTATAAAAAGATTCGAATGTGACGAGTGCGGCAAGAAATATTTCTATGAGGGGTCCCTTACGATTCACAAAAGACTTCACACTGGAGAGAAACCTTTTCGCTGCAGTTATTGCGAGAGAAATTTCTACACCGAGCAAATTTTATACAAACACACTTTGAGCCATGGAATTGACACTCGAGCAAAAGTATAA
- Protein Sequence
- MTILKLSYGDDSSVTIMNIVENKKHICKGCNGKFTRLTAFEKHVLGCSRIESENDEGQLTESDDDSDYHNGDDESSNDNTDGETEQDFVVHTCENCYKLFTDYTIYQNHIIDCSKKNRNNGFDAKGLKSGEKLKVKAEEENKFVCSTCYDDFKTEEDLKIHESLHREVEISAALVCHNHGTLKDKMVHGDAETSGNIDIEGEENERITEFISVEGNTKLSLTERREKRNYEKFFTGEVTSWCIYCDDTFTTPLLLNQHIKKCHPSIKKPRFGCISCKETNCGPKGLIKHYLTQHRNVCFVCLEEFPSTQAKLDHGKTHRYTCKICNASYTRLCQLLLHLKEKHQRIYTRDEPQKVIDNSDEITSYCVYCDQTFISPQLLPQHLDEIHPSIMNPRFGCFLCKESYSAKIILRNHILRQHKFVCSTCNKQFSSEEEKREHMKTHRYTCEVCGRSYSRLSNLSSHLKIHVGKKVKAKKTMCGDCGMFFVNVKAHMKTHKELSTREKFPCPECNQIFLSASRLKRCMDRHKGIKRFECDECGKKYFYEGSLTIHKRLHTGEKPFRCSYCERNFYTEQILYKHTLSHGIDTRAKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537150;
- 90% Identity
- -
- 80% Identity
- -