Xruf011235.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- Sall1
- Assembly
- GCA_963966045.2
- Location
- OZ014494.1:6525850-6528807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.8 3.8e+02 3.4 0.1 2 23 7 28 6 28 0.94 2 14 0.057 4.6 9.4 1.5 1 23 500 523 500 523 0.94 3 14 0.025 2 10.5 1.5 1 23 635 657 635 657 0.98 4 14 0.00019 0.016 17.2 1.3 2 23 660 681 659 681 0.97 5 14 0.54 43 6.4 0.9 1 10 687 696 687 709 0.81 6 14 0.00012 0.0096 17.9 3.4 2 23 716 737 715 738 0.95 7 14 1.3 1e+02 5.2 1.1 6 23 752 769 750 769 0.96 8 14 0.00025 0.02 16.8 4.3 3 23 776 797 775 797 0.97 9 14 0.08 6.4 9.0 0.0 2 23 813 833 812 833 0.96 10 14 0.01 0.83 11.8 2.3 1 19 839 857 839 861 0.90 11 14 0.0025 0.2 13.7 0.2 1 23 869 891 869 891 0.99 12 14 0.0015 0.12 14.4 3.7 1 23 897 919 897 919 0.98 13 14 3.1e-06 0.00025 22.8 2.6 1 23 925 947 925 947 0.98 14 14 0.0012 0.094 14.7 7.7 1 23 953 975 953 976 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCTGAGGACATTGTTTGTCCAGTGTGTACACTGTTCTTGCGACCCGGGATAACTTTGAAACAGCATTTAACCAGCCACCCGAAACAGAAGGTCATCGAAGCTTTGGTGCGCTTATCGAACCCAGAACGAGAAAATAAAGTAGAAAATGTGCCAGTATCGCCTTTGGAACCAAGAACTTCTCAACAGAGCGTGTCTGTTAACCAAACATGGAACCAGTCTATGCCAGGGAATTTTGGAGGTAATCATTCGTTTATTTACCAGCAGTTTATGAGTACATCTAGTCCACAGTCGGGGGTCCTCAATGTCAACCCTCTTACGCAACAGTATGTCACTATACCGACTGTTTTTAACCCTCAAATGATGTGTCCACCGTACGTTTATCAGCAACAGCAAGTGATTATGTCAAGTGGCCCGTCAATGCAGACCATTGTACCTCGCCCCTTGCCTATAGAGCTCCCTGCAGTAGAACAAAATTCAGTCACAATTTCTGATGTCAGCGATAATATCGCAGAAAATGAACCGCATTTTAAAAAAGCAAGAACTACGCAAACTGTGGACAAAGAATGTGATGAAGTTCGATCTCCTCAAGAAGAAGAAGTAACAGAATGTGATAAAATTGAAACAGTTCttgaagaagaagatgatgcTAAATCCGAGAAGAAAGAGGAAGATGAGGCAGAAGAATTACTGGAGCAAGATGATACATACGGTTGTCCCAGGTCCAACGATGGTTCAGAATGGAGCGTTCGCGTAAAATCGCTTAAAGATCTCAGTAAGGCTTGTCAAACACAGGCAAACTTAAACAGCGAGTCTCCCGCTGCTTCTCCGGAACCAGAAGACGTCCCTGAATATATCGGAATACCCGGAGAACAAGAAAAGAATTTTTACTATCCCGAAAATGTAGGAATAATCAATCCATTGCCCGAGAATCATTTCAGCCAAAATACTCCGGTGTACACAATAACGTCCAATAATGTCATAGCAACTGGTGAATCTGCGAGTTTCGTGGATTTAGATCGTATGCCGCTCATTCTCTCGAATGATTTTTTAAACAACCAGATCATATCTCAAGTGCACGATTTTGATAACGTGACAAGTAGCGAGAGGCCACACATTTTAATGACAATTGGGAGCATGGAGAATTCGCGAGAAGTCTTTAATGAATTCTCGGAAGAACACAGATTGGAGGAGGAAAATGTTTCTAGGGAGAGTGCGATTGTTAGCATCAGAGCCGATGAGAGAATGCCGGCGAGGGGAGAATTATCCGGACAAGAGAGTAATGGAGCTGCCAGTGATATTACTTGGAGTAGGGTACAGTATGGCGATGATGCTTCAGAGATACTGGCTTCTTACGAATTGGTACCAAGAGAAGAATGGGAAGTTTCCGATTGTTCCGATTCTGAAAGCGCTCCCGTTTATAATAATGTCAATGCAAACGTACAAGAAGAAGATGCTCCTACTATCGTTAGTTATTCTTCACCCCCTTTAAATTTCAAGTGCAGTAGATGTGATCAAGCTTTTAAAAGTGTCCAAGACAGATCTAAACACGTCAAAGAAAATCACCAAGAAGGAGTGAAAATTTTATCGAATACTTTAATCGGAGTGGGTTTAGAGAAAAAGAAAGTTAAGAAACTGATCGTGAAACCGAAAAAAGAGGAGGTTAAATCGGAAAATAATTTCGATAACGTTTTTACGAATAAATTAAAACTGGAAGCGAGTTCGGAAGTTGAAACTACATTAAACCAAGTTGAAGTAAAGCAACCAACTATAGAAATCGCAGATGCCATCAAATCTGATACAAAACTAATGTGTGCTCTTTGCGACAGTGTTTTACCTAATAGACGCATGTTGCATTTGCATAAATATGAAGCTCATAAGATCTCTGGCACTCGGAAACATAAATGTGCAACTTGCGAACAGGATTTCCCAAATGAGTACCGTTTCACGGAGCATTTACGGGTGCATCCTCTAGAATGCCGCATTTGCGGCAAATACTTCTACAAGCGAGTGAACATGCAACTGCACATGAAGCGCCATCTGGGTATAAAACCGTATAAGTGCGACGTTTGCGACAAAGCGTTTTTAACCAGACAAAAGCACGATGAACACAGGAATATTCATACGGGCGAGTCGCCAATTAAATGCTACTTGTGCAACGAATCATTTCGCAGGTATTCGAATTTGGTGCAGCACAAGAATACGCACCACTTGAACATCAAAAAGAAAGTCAAAGATTTTATTTGTTCTTGCGGGGAAATTTTCCATTCGAAGAAGAAATTGGCCTGGCACAAAGAGGTGCACGATCCCAAGCCGAAAGCTTGTTCGCACTGCACCGAGAAATTCATTCACATGTCGAGTTTGACTCGCCACATGCGGCGAGCCCACAATGAAAGATTCGTCCCGAAAGAAGACAGGAATAACGAGAACGTAGAATGCCCTATTTGTAAAGGGGTGTTTATTAAGAGCTCCTTGGCTGCTCATGTCCGTAACCACAGCGGGCAACGACCGTACACGTGCTCCCTATGCAATAAAGATTTCACTACCAAATGGAACTTGAAGTTCCACAAATGGACCCACGCCTCACGCACTTCTAAACCCTTTAAATGCGAATTATGCAAAGGGGCGTTCATTCGAGAGACTGAATACGTCGCTCATATGAATTCTCATAAAAGCGTCAAGCCATACACTTGTAATTACTGCGGGGCACAGTTTATTCGAAAGTGCAACAGGCAGAGGCACGTAAAGGAACACGAAAAGTCCAAAAATTTCAATTGCCAAGTGTGTGGGAAGGCCTTCCACCGGTCGTATTATCTCAAAGACCACATGAGGATCCACAGTGATTTGAGACCGTACACCTGTCATATATGCGGGAAAACCTCTAGGACAAAATCAAATCATAATAAACACGTGCGTATTCATCACGCTAGGGAGCCAGTGAGCACAGAGAATTAA
- Protein Sequence
- MESEDIVCPVCTLFLRPGITLKQHLTSHPKQKVIEALVRLSNPERENKVENVPVSPLEPRTSQQSVSVNQTWNQSMPGNFGGNHSFIYQQFMSTSSPQSGVLNVNPLTQQYVTIPTVFNPQMMCPPYVYQQQQVIMSSGPSMQTIVPRPLPIELPAVEQNSVTISDVSDNIAENEPHFKKARTTQTVDKECDEVRSPQEEEVTECDKIETVLEEEDDAKSEKKEEDEAEELLEQDDTYGCPRSNDGSEWSVRVKSLKDLSKACQTQANLNSESPAASPEPEDVPEYIGIPGEQEKNFYYPENVGIINPLPENHFSQNTPVYTITSNNVIATGESASFVDLDRMPLILSNDFLNNQIISQVHDFDNVTSSERPHILMTIGSMENSREVFNEFSEEHRLEEENVSRESAIVSIRADERMPARGELSGQESNGAASDITWSRVQYGDDASEILASYELVPREEWEVSDCSDSESAPVYNNVNANVQEEDAPTIVSYSSPPLNFKCSRCDQAFKSVQDRSKHVKENHQEGVKILSNTLIGVGLEKKKVKKLIVKPKKEEVKSENNFDNVFTNKLKLEASSEVETTLNQVEVKQPTIEIADAIKSDTKLMCALCDSVLPNRRMLHLHKYEAHKISGTRKHKCATCEQDFPNEYRFTEHLRVHPLECRICGKYFYKRVNMQLHMKRHLGIKPYKCDVCDKAFLTRQKHDEHRNIHTGESPIKCYLCNESFRRYSNLVQHKNTHHLNIKKKVKDFICSCGEIFHSKKKLAWHKEVHDPKPKACSHCTEKFIHMSSLTRHMRRAHNERFVPKEDRNNENVECPICKGVFIKSSLAAHVRNHSGQRPYTCSLCNKDFTTKWNLKFHKWTHASRTSKPFKCELCKGAFIRETEYVAHMNSHKSVKPYTCNYCGAQFIRKCNRQRHVKEHEKSKNFNCQVCGKAFHRSYYLKDHMRIHSDLRPYTCHICGKTSRTKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -