Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014503.1:21479219-21484204[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.11 8.9 8.5 1.1 3 21 8 27 6 28 0.86

2 14 1 81 5.5 0.1 2 20 34 52 33 54 0.89

3 14 2.9 2.3e+02 4.1 2.4 1 20 285 304 285 306 0.94

4 14 0.00018 0.015 17.3 3.6 1 23 314 336 314 336 0.98

5 14 0.00017 0.014 17.4 0.4 1 23 350 372 350 372 0.98

6 14 0.4 32 6.8 0.4 1 14 403 416 403 424 0.81

7 14 6e-06 0.00048 22.0 1.0 3 23 432 452 430 452 0.98

8 14 0.082 6.6 8.9 0.2 1 20 458 477 458 479 0.92

9 14 7.1e-05 0.0057 18.6 1.5 1 23 486 508 486 508 0.98

10 14 5.7e-06 0.00046 22.0 3.5 1 23 514 536 514 536 0.97

11 14 0.0014 0.11 14.5 5.6 1 23 542 564 542 564 0.98

12 14 5.6e-05 0.0045 18.9 0.2 1 23 570 592 570 592 0.98

13 14 3.1e-05 0.0025 19.7 0.2 1 23 596 618 596 618 0.98

14 14 0.0003 0.025 16.6 0.2 1 23 626 648 626 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.11	8.9	8.5	1.1	3	21	8	27	6	28	0.86
2	14	1	81	5.5	0.1	2	20	34	52	33	54	0.89
3	14	2.9	2.3e+02	4.1	2.4	1	20	285	304	285	306	0.94
4	14	0.00018	0.015	17.3	3.6	1	23	314	336	314	336	0.98
5	14	0.00017	0.014	17.4	0.4	1	23	350	372	350	372	0.98
6	14	0.4	32	6.8	0.4	1	14	403	416	403	424	0.81
7	14	6e-06	0.00048	22.0	1.0	3	23	432	452	430	452	0.98
8	14	0.082	6.6	8.9	0.2	1	20	458	477	458	479	0.92
9	14	7.1e-05	0.0057	18.6	1.5	1	23	486	508	486	508	0.98
10	14	5.7e-06	0.00046	22.0	3.5	1	23	514	536	514	536	0.97
11	14	0.0014	0.11	14.5	5.6	1	23	542	564	542	564	0.98
12	14	5.6e-05	0.0045	18.9	0.2	1	23	570	592	570	592	0.98
13	14	3.1e-05	0.0025	19.7	0.2	1	23	596	618	596	618	0.98
14	14	0.0003	0.025	16.6	0.2	1	23	626	648	626	649	0.95

Sequence Information

Coding Sequence: ATGGGTTCAATATCCTTGGAGTGCCCGCTGTGTTGTGACGAGAAATTTTCTACACACGACAGTTTAAAATACCATCTACTTAGTATCCTTGATAATCTCAGTTGCCCGGGATGTTCCGAAAAATTCCATAAAATAATAGATCTCGCCGAACATTTGGGCACGGGTTGCAACAAAACACCCGATACCAATATTAAAGCGGCAAATTTGAACACCATCAAAATCGAGATTCAGGATAATGATGGCGAAGACATAAACGACAGCATTTTGGCAAAAGCCCTGTTACGGAGACCTGAAGAAATTACCGACGACCAGGGGAGAAGTACTGAAGATACAATCGTTACCGAAGTTGACGTGGAAGAGGTAGAAATGGACAGTGAGGaagatttattttattgctctaGTTGTACTATTCACTTTACGTCTGTGGAGCAGCATTTGCAAGAGTTTCATGTGGGTCATGAAGTTCTAATACAGGATGGAGACGAAGTGGTATCCAAAGAAATCTTGGGTTTTGAAGAACGAAATGAATATGACGAAGACGGCGTAGATTTAGAATTAGAAAAAGCCTTAGAAGAGCATGACGATAACGCAACGGAATCGGACGATGCTAATCCTAAAAAGTACGAACAGAAAAACGAATTTCCCCAAATCTTGAATACGCTGCAGCAACAAGAATGTTTTGACAAAGATGGGCGTCTGTACACTCGTAAAGTGGTCAAAATCGAAAAATTCTGGGACGATAACATAAAATCACGGCCGGCGCCAATCACAGAAAAATATGTCGTTGAGAAAGGAAAAGCGAGGAAATTGAGTGTCGACGAAGTAATTGAAAACGAAAACATTATCGAAGTACACAAATGTGTCACTTGTAATGgccaattttcaaaattggaaTCATATAAAATACACACTTGCGCTAATCTTAAAAAGGTGGTTCAGTATAACTGTTCGAAATGTTCGGCATGTTTTGCAAATGCCAAATCTCTTTGCGCGCACATGAAGATCCACAGGGAAGAGAAAGAGAAAACTAGCCCTCCTTCTGGGCCGTATATTTGCGATGAATGCAATACCGATTTTCCGTCGTACAAATCGTTGAGATTGCACGTACGCATGCACGATCCGATAAAATCTAGAGAAATCGAAGCACCAGTTTCTTACGGAATAACCGGAGGGGACGAAGCAGAAAAAGACGCCATGCGAGAGATGTTTgtgtgtgaaatttgcaataaagcgTACGACAAGCAGTACGAGGATGCTCATATGAATTTTCATAAGAACGAAGATGATTTCGGTTGCGATATTTGCAACAGGAAGTTTTATACGAAGTCGAATTTGGATATGCACATGCGGGTGCACTCTAACGGAAAGAAGTTCACGTGTTCGTATTGTAAGAAAGGCTTTTTGGCGTACGAGAATCTGCAAGAGCATATTGCCAACCAGTGCCAAAAACGGAGGTACGAGTGTCAGTACTGCGGCCGTCGCTTCGCAAGACCCCACGAAAAAGTCAAGCACGAAAGAATCCATACTGGAGAGAAGCCCCATATTTGTCAAATCTGCGGGAAGGCTTTCCGTGTCAGCTACTGCCTTACGCTGCACATGCGCACCCATTCAGGGACAAGGCCCTATCAGTGCCCCTACTGCAGCAAGCGCTTCAAAGCTCACAGTGTCTTCAACCATCATCTGTTGACTCATTCTGACGTCAGGGCTTATAAGTGCCCATATTGTCCCAAAGCTTTTAAGACAGGGGTGCAGCTAGCCGGACACAAGAACAGCCATATTAAGCCTTTCACTTGCACAGAGTGCAATCGGCCGTTTGCTTCGTTATACGCCGTCAGGGCTCACATGGAAACACATAAAAGGGagaataatttgaaatttagCTGTTGGTTGTGCGGGGCTTCGTACGCAAGGGCTTTTGCTCTGCGGGATCACATACGAGACCACCACGACGGGGAGCAAGAAGAGATTGCTGTTAATGGTATTTCAGGATCGGAAGCGTTGATTCAGCTGGAGAATGAACACGTCGAAATGGAAATTGACGATAACGATACCATCGAGACGATTCATTCCGTGGAGACGATCGAAGAAGTTAATGTAATTAATGCCGCCGAATAA
Protein Sequence: MGSISLECPLCCDEKFSTHDSLKYHLLSILDNLSCPGCSEKFHKIIDLAEHLGTGCNKTPDTNIKAANLNTIKIEIQDNDGEDINDSILAKALLRRPEEITDDQGRSTEDTIVTEVDVEEVEMDSEEDLFYCSSCTIHFTSVEQHLQEFHVGHEVLIQDGDEVVSKEILGFEERNEYDEDGVDLELEKALEEHDDNATESDDANPKKYEQKNEFPQILNTLQQQECFDKDGRLYTRKVVKIEKFWDDNIKSRPAPITEKYVVEKGKARKLSVDEVIENENIIEVHKCVTCNGQFSKLESYKIHTCANLKKVVQYNCSKCSACFANAKSLCAHMKIHREEKEKTSPPSGPYICDECNTDFPSYKSLRLHVRMHDPIKSREIEAPVSYGITGGDEAEKDAMREMFVCEICNKAYDKQYEDAHMNFHKNEDDFGCDICNRKFYTKSNLDMHMRVHSNGKKFTCSYCKKGFLAYENLQEHIANQCQKRRYECQYCGRRFARPHEKVKHERIHTGEKPHICQICGKAFRVSYCLTLHMRTHSGTRPYQCPYCSKRFKAHSVFNHHLLTHSDVRAYKCPYCPKAFKTGVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRENNLKFSCWLCGASYARAFALRDHIRDHHDGEQEEIAVNGISGSEALIQLENEHVEMEIDDNDTIETIHSVETIEEVNVINAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -