Xruf043536.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26633640-26634866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3e-05 0.0011 20.9 6.3 1 23 61 83 61 83 0.98 2 12 4.4e-05 0.0035 19.2 7.0 1 23 89 111 89 111 0.98 3 12 0.003 0.24 13.5 3.4 1 21 117 137 117 139 0.93 4 12 0.0025 0.2 13.7 5.3 1 23 145 167 145 167 0.98 5 12 9e-05 0.0072 18.2 6.0 1 21 173 193 173 195 0.95 6 12 0.018 1.5 11.0 5.2 1 21 201 221 201 223 0.95 7 12 0.0014 0.11 14.5 5.7 1 21 229 249 229 251 0.95 8 12 1.4e-07 1.1e-05 27.1 0.9 3 23 259 279 257 279 0.97 9 12 0.00073 0.059 15.4 4.8 1 21 285 305 285 307 0.95 10 12 2.3e-05 0.0018 20.1 3.8 1 23 313 334 313 334 0.98 11 12 0.0011 0.086 14.9 5.2 1 23 340 362 340 362 0.99 12 12 5.8e-05 0.0047 18.8 5.4 1 23 368 390 368 390 0.97
Sequence Information
- Coding Sequence
- ATGCTAACATTGAAAAATGCCCCAAATTTATTTCATTTGCAGCCAGAGGTTTCCCATAATACAAAGAATGACGAAATAAAAAACGAACCCGTTGAGGAAATTAGCAAAAAGGAATTCGGATCTCCCCCAAGTATAAGTGTATTAAATTCCCATTCGCCGCTAGGTTCTGGTGAAAAACTGCACAAATGCGAGAAGTGCAATAAAACATTTCATCGGCCGCAAAATTTAAAGCGTCACGTGATGAGCCACACAGAGGAGAGACGCCACAAATGCGACATATGTAAAAAGGGATTCCATCAGCAAGGGCATCTAAAGACCCACATGATGAGTCACACAGGCGAGCGACCGTTCAAATGTGACCTGTGCGAGAAAACGTTCACCCGCGCTACTTATCTAGCGGGTCACAAGAAGTGCCACACagacgagaagccccacaaatgtgaagtgTGTAAAAAGGCGTTCCATCTGGCGCACTATTTAAAAGATCACATGATATCCCACGCTAAAGAAAAGCCCCATAAATGCGAAATATGCGGTAAAACGTTCTGTAAAATCTCAAATCTTAGGGCGCATGTAAGATGTCACACTGACGAAAGACCACACAAGTGCAAACTGTGCCAAAAGGCATTCCGTGAGAGTACGAAGCTGTCTTTGCATATGTTGTGCCACTCGGGCGAGAGGCCCCACAAATGCGAAGTTTGCAACACGTCGTTCCGTTACCAACAACATCTGATCGATCACATGCTGTGCCACACAGACGAGAGACCTTACGGATGCAAAGTATGCGACAAGGCGTTCCGTACGACTTCGAACCTTAAGGCCCACATGAGGTACCACACGGACGAGCGGCCGTTCCGATGCGAAGTGTGTCAAAAGGCGTTCCATCAGAACGCAACTTTATCGCGTCACATGAAGTGCCACTCGGGCGAGCGTCCCCACAAATGCGAAATATGCAACAAGGAATTTCGCAATTCGTATTTAAAGACCCATATGATGAGCCACACAAACGAGAAACCTTACAAATGCGAAATATGTACGAAAGCATTCTGCACTCTTAATAGCCTGAATTGTCACATGATGTCCCATACAGACGAGAGACCCTTTGCGTGCAAAGTCTGTAACAAAGCATTCCGTAAGCACTCGCATGTACAGGAACACATGAAGCGGCACAACGACGGGGAAAAGGAACAGTCCGCAGCCGACCACAAGTTTTTAATAagaatgtaa
- Protein Sequence
- MLTLKNAPNLFHLQPEVSHNTKNDEIKNEPVEEISKKEFGSPPSISVLNSHSPLGSGEKLHKCEKCNKTFHRPQNLKRHVMSHTEERRHKCDICKKGFHQQGHLKTHMMSHTGERPFKCDLCEKTFTRATYLAGHKKCHTDEKPHKCEVCKKAFHLAHYLKDHMISHAKEKPHKCEICGKTFCKISNLRAHVRCHTDERPHKCKLCQKAFRESTKLSLHMLCHSGERPHKCEVCNTSFRYQQHLIDHMLCHTDERPYGCKVCDKAFRTTSNLKAHMRYHTDERPFRCEVCQKAFHQNATLSRHMKCHSGERPHKCEICNKEFRNSYLKTHMMSHTNEKPYKCEICTKAFCTLNSLNCHMMSHTDERPFACKVCNKAFRKHSHVQEHMKRHNDGEKEQSAADHKFLIRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536961;
- 90% Identity
- iTF_01536961;
- 80% Identity
- -