Xruf043534.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26623977-26625239[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00033 0.027 16.5 0.0 2 23 78 99 77 99 0.94 2 12 1.1e-05 0.00085 21.2 5.1 1 23 105 127 105 127 0.98 3 12 0.00017 0.014 17.4 2.0 1 21 133 153 133 155 0.95 4 12 8.5e-06 0.00069 21.5 3.6 1 21 161 181 161 183 0.95 5 12 8.6e-07 6.9e-05 24.6 1.7 1 23 189 211 189 211 0.98 6 12 0.076 6.1 9.0 6.4 1 20 217 236 217 239 0.96 7 12 0.0034 0.27 13.3 5.3 1 21 245 265 245 267 0.95 8 12 4e-05 0.0032 19.4 8.3 1 21 273 293 273 295 0.95 9 12 0.0006 0.049 15.6 5.4 1 23 301 323 301 323 0.98 10 12 0.00012 0.0096 17.9 2.6 1 21 329 349 329 351 0.94 11 12 0.00013 0.011 17.7 3.1 1 21 357 377 357 379 0.94 12 12 1.6e-05 0.0013 20.6 8.2 1 23 385 407 385 407 0.98
Sequence Information
- Coding Sequence
- atgtctttttgcgATTCACTTAATAAGGAAATAAAAGTAGAAACCGTAAACGAAGGAGAGGCAATAAAACAGTCGATTGTCAAATCGAACTTTTGCGAAGAAAACGTCAAGGTAAGGGCACTACTTAAAAATATTGCCTCAGTAATCAGTTTCACTTTCTTGAAGCCAGAGATTTCTTGTTGTACAAATAACCGTGTGATAAAAACGGAACGCAAAGAAGTTAAAATATTAAGATGTCCCGTTTGTCCAAAAATGTACGCTAGTGCCAGTGGTTTAAGAGACCACTCGGCAGTACATACGGGTAGAAACCCGCACAAATGCGACATTTGCAATAAAGTATTCCAACGGCCGCAATTTCTAAAACATCATATGATGACCCACTCGGGCGAGAGACCGTACAAATGTGAGATATGTACGAAAGCGTTCAATCTGCCACAAACTTTAAAACGCCACATAATGTGCCACTCGGAACAGAGGTCGTATAAATGCGAAATCTGCAAGAAAGCGTTTCGCCAACAGATGAATCTGAAGAGCCACATgttgtgccacacaggcgagagaCCGTTCAAATGCGACCTGTGTGGCAAAGCGTTCACTCGCGCCACTCATTTAGCTAGTCATACGATGCGTCACACGGGGGAGAGACCGTTCAAATGCGATGCATGTGAAAAAGCGTTTCACTCGCTGCACCATTTAAAAGATCACATGGTTTGCCACGCGGACGAgaggccccacaaatgtgaaatatgcgaCAAAGCGTTTCTTCAACAACAACATCTAACCAGTCACATGATGTGCCATACGGATGAGAGACCTCATAAATGCGAAGTATGTGACAAAGCGTTCCGTAGACGATCGCATCTAAAGAAACACACGAGGTGTCACACGAACGAGAGGCCTTACAAGTGCGAGGTGTGTCAAAAGGCGTTCCGCCAGAATACGCACTTGTCGTGTCATATGTTGAGTCACTCGAGTGAGCGACCCCACGAATGCGAAATTTGTAATAAAGCGTTTCGTGAGCTCTCGTATTTAAAGGTGCATATGATGTGCCACACCGACGAGAAACCcttcaaatgtgaaatatgtcagAAGGTGTTCTTCACCTCCAGTACTCTAAATAGCCACGTAATGTGCCACACAGACGTCAGGCCCCACAAGTGCGACATATGCAACAAAACGTTCAGACTCCAACACCATCTAAAGAAACATATGATCAGTCACACGAACTATGACAAAAAGTATTTTGTCGGTGTTCAAGACTAA
- Protein Sequence
- MSFCDSLNKEIKVETVNEGEAIKQSIVKSNFCEENVKVRALLKNIASVISFTFLKPEISCCTNNRVIKTERKEVKILRCPVCPKMYASASGLRDHSAVHTGRNPHKCDICNKVFQRPQFLKHHMMTHSGERPYKCEICTKAFNLPQTLKRHIMCHSEQRSYKCEICKKAFRQQMNLKSHMLCHTGERPFKCDLCGKAFTRATHLASHTMRHTGERPFKCDACEKAFHSLHHLKDHMVCHADERPHKCEICDKAFLQQQHLTSHMMCHTDERPHKCEVCDKAFRRRSHLKKHTRCHTNERPYKCEVCQKAFRQNTHLSCHMLSHSSERPHECEICNKAFRELSYLKVHMMCHTDEKPFKCEICQKVFFTSSTLNSHVMCHTDVRPHKCDICNKTFRLQHHLKKHMISHTNYDKKYFVGVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -