Xruf038656.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014500.1:30302971-30304460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-06 0.00015 23.5 0.5 1 23 68 90 68 90 0.98 2 12 9.6 7.7e+02 2.4 0.7 2 8 94 100 93 103 0.86 3 12 2.2e-05 0.0017 20.2 0.2 1 23 133 155 133 155 0.98 4 12 9.5e-05 0.0077 18.2 1.2 1 23 161 183 161 183 0.97 5 12 4e-05 0.0033 19.3 1.8 1 23 189 211 189 211 0.97 6 12 0.0019 0.16 14.0 0.8 1 23 217 239 217 239 0.97 7 12 0.0036 0.29 13.2 0.4 1 19 247 265 247 268 0.94 8 12 5.2e-05 0.0042 19.0 3.2 1 23 278 300 278 300 0.96 9 12 0.00084 0.068 15.2 2.1 1 23 308 330 308 330 0.91 10 12 2.4e-05 0.0019 20.1 0.8 1 23 336 358 336 358 0.98 11 12 2.3e-05 0.0019 20.1 1.8 1 21 364 384 364 385 0.94 12 12 5e-06 0.0004 22.2 0.4 1 23 394 416 394 416 0.98
Sequence Information
- Coding Sequence
- ATGTCACTTTGCAATCCAAATAAATCCGAAATAAAATCGGAGACAGAAGAAATGCTTATGGTGTTTGTAATTGAAGAAACAGAGTCAGTTCTTAAGATCGATTTTTGTGTAGAAGACGAAAAGGCAGAGATCTTTCCGGATGTAAACAATGACGAAGCAAAAAATGAACAGACAGAATCACGTGAAGAAAGCGCAAAGAAATACAGGTGTCCCGAATGTCCAAAAGTcttttccaaaaactttatgtTAATATCCCATTTGTTAAAACACACGAACAAAAAATGCAAGGTATGCGGGAAGCTTTATGTAGCCGAGAGACCCCATTCCTGTAAAGCAGGCTTCCATAGCCCCAAAGCCCTAGAGAATCGAACGATAATGCAGAGGGGCAAGGGACCCTAcgtatgtgaaatatgtaaaacgcCATTCCCCATGCCACATGCTCTAAGGAACCATATGTTAATGCACACGGGTGAAAAACCGCAcgtatgtgaaatatgtaaagcAGCATTCCGTTTGCCACATACTTTAAATAAGCACATGTTAATACACACAGGCGAGAGACCTCAcgtatgtgaaatatgtaaaacagCATTCCGTTTGTCACAAAGTTTAAAGAAGCATATGTTAATGCACACGGGCGAGACACCTCAcgtatgtgaaatatgtaaagcAGCATTCCGCTGGTCCCAAGCTCTAAAGAACCACTTGAGAAGGCACGCAGTCGAAACAGGCCCCAAGTTCAAATGCCACGACTGTTTGAGAATCTTCAGCAACGAGAACGGGTTAAAATTGCATTCGTTAGTAAGCACATGTGACAGGAACAAACATCGTCAcgtatgtgaaatatgtaaaacgaGGTTTTGTCAACCCGAAAATCTGACCAAACATGTGCTTCAGCACACGGGTGAGGGACCCTCGAAATTTGCTTGTACCGATTGTCCGAAAGTCTTCAGAACCGCGAATAACTTAAAATGCCATTCGACAATGCATATGGGTGAAAAACCAcataaatgtgaaatatgtggaAGCACATTCCGATTACCCATAAGTCTCACGCGTCATATGGTAACACACACGAACGCAAGACCTCACGTATGTAAAATGTGTAATAAAGCGTTCCGTCTGCGCAGTACTCTAAAGAAGCACATGTTAAGGGAAATGGGTGAGATAGACTTTAAATTCAAATGTCCCCGTTGTCCGAAAGTTTTCATCACCTCGGAAGGGTTGAAACTCCATTCCAGAATGCATACGAGTGATGAAGGAGCTTTTGATGAAAACCCAGCGACGCCAATACTTGAGTCGGGTACTTTTGTATTAAAAGAAGAGATTAAAGTCGAGGAAATTCAGATTGATGGGAGTGTGAAGGAAGAATTCGAACCCATTGACGAGGGAAATAGGATATTTATAAATGAATTTTCTCACGAATAA
- Protein Sequence
- MSLCNPNKSEIKSETEEMLMVFVIEETESVLKIDFCVEDEKAEIFPDVNNDEAKNEQTESREESAKKYRCPECPKVFSKNFMLISHLLKHTNKKCKVCGKLYVAERPHSCKAGFHSPKALENRTIMQRGKGPYVCEICKTPFPMPHALRNHMLMHTGEKPHVCEICKAAFRLPHTLNKHMLIHTGERPHVCEICKTAFRLSQSLKKHMLMHTGETPHVCEICKAAFRWSQALKNHLRRHAVETGPKFKCHDCLRIFSNENGLKLHSLVSTCDRNKHRHVCEICKTRFCQPENLTKHVLQHTGEGPSKFACTDCPKVFRTANNLKCHSTMHMGEKPHKCEICGSTFRLPISLTRHMVTHTNARPHVCKMCNKAFRLRSTLKKHMLREMGEIDFKFKCPRCPKVFITSEGLKLHSRMHTSDEGAFDENPATPILESGTFVLKEEIKVEEIQIDGSVKEEFEPIDEGNRIFINEFSHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536909;
- 90% Identity
- -
- 80% Identity
- -