Xruf009824.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43506233-43522077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.45 36 6.6 3.2 1 23 277 300 277 300 0.94 2 17 0.32 26 7.1 1.0 1 23 305 328 305 328 0.93 3 17 4.4e-05 0.0036 19.2 0.3 1 23 333 355 333 355 0.98 4 17 0.0051 0.41 12.7 1.6 1 23 361 384 361 384 0.97 5 17 0.036 2.9 10.1 1.8 1 23 389 411 389 411 0.99 6 17 0.0068 0.55 12.3 0.4 2 23 419 441 418 441 0.96 7 17 0.0098 0.79 11.8 0.3 1 23 449 472 449 472 0.94 8 17 0.00062 0.05 15.6 1.2 1 19 478 496 478 500 0.91 9 17 1e-05 0.00082 21.2 0.2 1 21 505 525 505 526 0.95 10 17 0.024 1.9 10.6 0.3 1 23 543 565 543 565 0.95 11 17 0.0007 0.056 15.4 0.4 1 23 571 594 571 594 0.98 12 17 0.00021 0.017 17.1 1.3 1 23 599 621 599 621 0.98 13 17 6.4e-05 0.0051 18.7 1.3 2 23 629 651 628 651 0.97 14 17 0.00085 0.069 15.2 0.1 2 23 661 682 660 682 0.97 15 17 9e-05 0.0073 18.2 1.1 1 23 688 710 688 710 0.93 16 17 3.5e-06 0.00028 22.7 2.5 1 23 716 739 716 739 0.97 17 17 0.013 1 11.5 1.7 1 23 745 768 745 768 0.97
Sequence Information
- Coding Sequence
- ATGGCTAGCATAATGGAAATTATGCAATTGTGCAGACTGTGTTTAGTTAAGGACCAAGTGAATATACCAATTTTTGAAGAACAAGGTGATATTAGGAATATTCTGCTGAAAATCTCGGCGTGCCTGCCGGTTAAGGTTTCGAAAGAAGACAAACTACCTAAGAAAATATGCGATGGCTGTTCGTACAAATTAGACTTACTTTATCAGTTTTGGAATACTGCTGCGAATGCGGAAAAACAACTTATAACATGGATAGCCCAGGCTGGAGCAGACAATAAGAAGACTTCTGACGTAACAAAATCTCAGGAAAACGCCCTTGCCGAAGTAGGAATCGTATTGAAACAGGAAGTCTTGGATCCATCGGAAACTAGAACGGAAGATAAAATTTCCGACGATACACATAGCTATATTTTGCAACAGCAGCAATTGCCGTATCAGCCTTTTGCGTTTTCTGGCACAAGTGCGGCACCCACTGCAACTGTTACTAGCGAAGAAGTTGAAGAACCACCTGCAAAGCGGCCCAGAAGGGTTGCCGCCGCCGCCGCTGCTGCTGCAGCAACCTCAATGGCTGCCGACGAGTCAGAGTCTGAAGATGACAATTTGGACACGGAGGAGATGGGAGTTACAAAGACTGAAGAAGACAGCGAAGCCGAAGTTGATGATCCTGAGCCTGCTTTTGTAGACGTACCTTCAACTAGTGCCGATGTCGACCAGCCCGGCCCTTCGGGCATAGGGAAAACCCCAGCCACCGATGCACCACGCAAGGCctttaaaaaaatgataagcGTGCCTCTACGACTGCTTCAAACTGGTCGGTTAATAAAACCGCATAAATGCCGGACCTGCAAACGACTTTTTCCAAACACCACTGCAATGAGGAAGCACAGGGAACAGGTTCATTATAAGAAAAGGCACGATTGCGTTGTGTGTCGAAGACGGTTTAAGTCTGAGGAAGAGAGGGACGCGCATCGACGGGAAGTGCATGAGGGAAACTACTACGAGTGCGATTTTTGCGGGAAGAAATACACGGCGAGGTCTTCTTTAGTTGATCACATTGAAACCCATGCTTTAGAATCTAAATTTCGGTGTAAAGAGTGTAATAAATTGCTGGGAAGCAGTAATAGTTTGAAAAATCACGTGAGAAATTTTCACGAGGGAGTTACATTCAAGTGTCAGCTTTGTGGGTCTGTTTATCGCATCGAAAAGAAGTATAAGTTGCACTTGAAGACCCACGAACCGGATTATTCCAGGGTGGTGTGCGAGTTTTGTGGTAGGACCTTCATGAACAGCGACGTGAGGAAAGCGCACATCAACAAGAAACATTCCGATAAAGTGAATAAGAAATTTCTTTGCGACATTTGTGGTTTGGAGACGACTACCAGCAATGGTCTTCGTGATCACAGGATCAGGAGACATACGGGAGAGAAACCGTACGTTTGTGAGCAGTGTGGCCGTCGCTTTACTACGGCTAACGTACTCAAGCGCCATTGTGCAGTACATTCTAGGGCGAAGTTTACGTGCGAGCAATGCGATAAGTCGTTTGTGCGCAATAAGTCGCTTGCTGCACACGTCCGttcCCCTGAGGAAAGAGAAACGCACAAGAAAGAGGAGCATGCCACGAAAGGCTTTCCTTGTCAATTTTGCGAAAAACAGTACGCGACTAGGACTGGTCTAGTGAATCATTCAGAGATCCATTTAGTGAATCCCAACTTTAAATGCGAACAATGCGACCAAACAGTGGGTGGCAGACAAGCGCTAAAGCGACACATGCAGAAAGTTCACAATGAAATGTTAtacgcatgcgaaatttgcTACAAAGTGTTTACCACCGACGGTAATAGAAAGAAACATTTGAAAAAGCATGATTCCACTTATTCTAGAATACAGTGTGAGTACTGCGACAAGTCTTTCTCGGATAAACCAACTAAAATGAAACATGTTCGTCGTACCCATTTGGGAGAAGAGATGTGTAGGGGGGTTGTTTGTGACGTTTGTGGTCTTAAACTAACCGAAATCGATAATCTGCTTAAGCACCAAAGGACGCACACTGGCGAGAAGCCGTTTGTTTGCGAGCACTGCGGCCGTTCTTTCGCACGATTTCAGCAGCTCAAGATACATTCTGTAGTGCATACGAAAGAGAGGAAACATTCTTGCACAGAATGCCAGAAGACTTTCACGCAAAGAGGGTCGCTTAGGTTGCACATACGATCTGTTCATCAGAAGAAGAAACCGTTCGAGTGCCTCGTATGCCAGAAAAGATTCCTAACTAGTACCTTGCTAAAAGTTCATAAAAGAAATACTCATGGTATACCTCTAGCTGAGGTTGTGATAGACAGAGTAACGGTCTAA
- Protein Sequence
- MASIMEIMQLCRLCLVKDQVNIPIFEEQGDIRNILLKISACLPVKVSKEDKLPKKICDGCSYKLDLLYQFWNTAANAEKQLITWIAQAGADNKKTSDVTKSQENALAEVGIVLKQEVLDPSETRTEDKISDDTHSYILQQQQLPYQPFAFSGTSAAPTATVTSEEVEEPPAKRPRRVAAAAAAAAATSMAADESESEDDNLDTEEMGVTKTEEDSEAEVDDPEPAFVDVPSTSADVDQPGPSGIGKTPATDAPRKAFKKMISVPLRLLQTGRLIKPHKCRTCKRLFPNTTAMRKHREQVHYKKRHDCVVCRRRFKSEEERDAHRREVHEGNYYECDFCGKKYTARSSLVDHIETHALESKFRCKECNKLLGSSNSLKNHVRNFHEGVTFKCQLCGSVYRIEKKYKLHLKTHEPDYSRVVCEFCGRTFMNSDVRKAHINKKHSDKVNKKFLCDICGLETTTSNGLRDHRIRRHTGEKPYVCEQCGRRFTTANVLKRHCAVHSRAKFTCEQCDKSFVRNKSLAAHVRSPEERETHKKEEHATKGFPCQFCEKQYATRTGLVNHSEIHLVNPNFKCEQCDQTVGGRQALKRHMQKVHNEMLYACEICYKVFTTDGNRKKHLKKHDSTYSRIQCEYCDKSFSDKPTKMKHVRRTHLGEEMCRGVVCDVCGLKLTEIDNLLKHQRTHTGEKPFVCEHCGRSFARFQQLKIHSVVHTKERKHSCTECQKTFTQRGSLRLHIRSVHQKKKPFECLVCQKRFLTSTLLKVHKRNTHGIPLAEVVIDRVTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -