Xruf027826.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- Zbtb41
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:32688388-32692346[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00069 0.055 15.5 2.2 3 23 113 133 111 133 0.97 2 18 0.0057 0.45 12.6 2.3 1 21 146 166 146 167 0.94 3 18 0.014 1.1 11.4 0.2 1 23 239 262 239 262 0.97 4 18 0.00078 0.063 15.3 0.6 1 23 272 294 272 294 0.98 5 18 3.8e-06 0.00031 22.6 1.4 1 23 300 322 300 322 0.96 6 18 0.0011 0.088 14.8 0.3 2 23 329 351 328 351 0.93 7 18 0.0029 0.23 13.5 2.9 1 23 359 381 359 381 0.98 8 18 2.7e-05 0.0022 19.9 0.5 1 23 387 409 387 409 0.98 9 18 0.00011 0.009 18.0 1.3 1 23 415 438 415 438 0.97 10 18 0.0002 0.016 17.2 4.4 1 23 452 474 452 474 0.95 11 18 2.7 2.2e+02 4.1 7.7 1 14 480 493 480 506 0.81 12 18 0.0057 0.46 12.6 0.4 3 23 514 534 513 534 0.88 13 18 0.0002 0.016 17.2 1.1 2 23 541 563 541 563 0.93 14 18 0.024 1.9 10.6 5.9 1 23 571 593 571 593 0.97 15 18 0.0023 0.18 13.8 4.2 1 23 599 621 599 621 0.97 16 18 0.29 23 7.2 2.2 1 23 627 650 627 650 0.95 17 18 0.0043 0.35 13.0 8.6 1 23 664 686 664 686 0.97 18 18 4.5e-05 0.0036 19.2 2.1 1 23 692 715 692 715 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAAAAATCAGAAATTTGTTGTGTATGTACACAAAATGACTCTAATTTGATTGAAATATCAACAAGAGACACCAATGGCATTACATTTGTGTCGAAATTAAGTTCTTGTGTGCCTGAAGTGAATTGGCCCGCTGATTTCCTGTTATGTCAAAAATGCACAGAATACTTGGAAGTTGGCTATACATTCCGGCAATTATGCCTCCAGTccgaaataattcaacaattaAGTGTCGATAAGTCTATGGGCGTCAAAGAAGAAGCGACTCCTTTACTTCCAGAATATATTCACGTCAGACCCTTAAATGTCGAAATGAAAGCAGAAAGTGTGATCTGCTATCATTGTAATAAGCAATTTGAGAATAAAACGGTGCTTTCGGAACATATGAAAACACACAACGATGATACTAGCAAATCTGGATCGGTGAAGCAGTTTTGCTGCAACAAGTGCGGGAAACAGTACATTAGTTCATCTAAAATGCAGATGCATCGTAATATATGCAATGGAAACAAGAGAAATTTGAGGGAAaagcaaaataataaatataagtgTACTGGTATAATAATAACCTCGGAAAAAGATATTGATGATGGTGATATAAACGAAGATGATGACGTGAAGGTGGAAACAAGTATTAATGACGATAGTTGTCGAGAAGATGTAGAAGTGGAAGAGGTGGTGCCCAGAAAGAAGCCTTGTCCAAAATATGAGTACCCGTGCGAGTTGTGTCCTGAAATTTTCAAATCGGGAAAACGATTTACGGATCATATCCAGAAAGTTCACGATAAAGATCCCAGAGTTTTTAAGCCTTTTCGCTGTACGAAGTGTGGGAATAGATACGTGCGAGGCGATGCTTTGCGTTCCCACATAAACCAGCACAGAAATGCAGGCAGGTTCGTCTGCAGCTACTGCGGCAAGAGCTTCAAGATGAAGAGAAACTTAAAAATACACGAAACCATTCATTTGAATTTGCATAACGTTCGCTGCGATCTGTGCGAGAAGGGCTTCAACACCGCTaacaatttaaacatacatAACTTGATGAAACATACGGATCCCGGTGCGTGGAAATTTTATTGCGAAATTTGCGACAAAAAGTTCCCCGTTCGCTCGAACTATGACTGTCACATACGGAGGCATAAAGGAGAGAAACCTTATTCTTGCGACGCTTGTAATAAAGCTTTCGTTACTAGTTACGAGCTTCGAACGCACGTCAAGTCCCATTCGAGCGTCGCGAtgtataattgcgagaattgcGACAAGAAGTATTACAAAAAAGAATCGTTGGAAGTGCATTTAAAAAAAGTGCATGATTTGGGGGATAAAGAGTTTGCTAGGCCTGAACCGAAGTTTCTTTGCAGTCATTGCCCTAAGAGGTTTTATGGCAGTTCTAAATTGGCGAGGCACATGTGTGTACACACGGGATATAAACCTTTTAGTTGCGATTTGTGCGGCAAGACATTTTCGGATAGGTATGTTCGTGATCATACTCTGCACGATCACTTGCGTCAGCACGACAATCCGGGCAATAACATTTGCAGCTACTGCGGGAAGATCTTCAAGACGAGGATCGACCTCAAATTTCACGAGGACATTCACTTAAACATGCGTAGTAATCGTTGTGAAATCTGCGATAAAGGTTTTAATACGTATAAAAACTTACGGACGCACAATTTGATCAAACATCGCGATCCGAGCACTTGGAAGCACTACTGCTCGATTTGCGACAAGAAGTTTCCCATAAAATCGAATTTCGATTGTCACATGAGACGCCATACTGGAGATAAACGCTACATTTGCCACGTTTGCCAGAAATCCTTCGTGACGAACAAAGAATTGAATTGTCACCTATTATCGCACTCGAATGTTCGCAAATTCAAGTGCTGCTTGTGCGACAAAGAATACAAAGAGAAGCAAGTGCTGGATTTACATTTAACTAAAGCGCACGGGATCGGTAATCGGAAATTGCCGAATCAAGAACGCAAACATAGTTGCAGTTTTTGCCCCAAGGCTTTCCACGAtaaaaataagttaagaagacaTTTGTGCACGCATACCGGTGAGCGTCCTTTTGCTTGTCACCTTTGCGACAAGAAATTTACCGATAAGTCGTATGTTACGCAACACTTAAAGGGTGTCCACAATATTTTTAACGATGATTGA
- Protein Sequence
- MSEKSEICCVCTQNDSNLIEISTRDTNGITFVSKLSSCVPEVNWPADFLLCQKCTEYLEVGYTFRQLCLQSEIIQQLSVDKSMGVKEEATPLLPEYIHVRPLNVEMKAESVICYHCNKQFENKTVLSEHMKTHNDDTSKSGSVKQFCCNKCGKQYISSSKMQMHRNICNGNKRNLREKQNNKYKCTGIIITSEKDIDDGDINEDDDVKVETSINDDSCREDVEVEEVVPRKKPCPKYEYPCELCPEIFKSGKRFTDHIQKVHDKDPRVFKPFRCTKCGNRYVRGDALRSHINQHRNAGRFVCSYCGKSFKMKRNLKIHETIHLNLHNVRCDLCEKGFNTANNLNIHNLMKHTDPGAWKFYCEICDKKFPVRSNYDCHIRRHKGEKPYSCDACNKAFVTSYELRTHVKSHSSVAMYNCENCDKKYYKKESLEVHLKKVHDLGDKEFARPEPKFLCSHCPKRFYGSSKLARHMCVHTGYKPFSCDLCGKTFSDRYVRDHTLHDHLRQHDNPGNNICSYCGKIFKTRIDLKFHEDIHLNMRSNRCEICDKGFNTYKNLRTHNLIKHRDPSTWKHYCSICDKKFPIKSNFDCHMRRHTGDKRYICHVCQKSFVTNKELNCHLLSHSNVRKFKCCLCDKEYKEKQVLDLHLTKAHGIGNRKLPNQERKHSCSFCPKAFHDKNKLRRHLCTHTGERPFACHLCDKKFTDKSYVTQHLKGVHNIFNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -