Xruf009877.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43768898-43775784[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00034 0.027 16.4 0.1 1 20 34 53 34 55 0.94 2 26 0.16 13 8.0 0.2 1 23 86 108 86 108 0.97 3 26 0.79 64 5.8 0.3 5 23 179 198 177 198 0.93 4 26 2.3 1.9e+02 4.4 0.3 6 23 211 229 208 229 0.94 5 26 9.8 7.9e+02 2.4 0.1 2 23 232 253 232 253 0.95 6 26 3.3e-05 0.0027 19.6 2.6 1 23 255 278 255 278 0.97 7 26 0.0025 0.2 13.7 0.2 2 23 300 322 299 322 0.91 8 26 0.18 15 7.8 2.9 3 23 332 353 330 353 0.96 9 26 0.00072 0.058 15.4 1.5 1 23 355 377 355 377 0.98 10 26 0.00023 0.019 17.0 0.4 1 23 379 401 379 401 0.99 11 26 0.25 20 7.4 1.0 2 23 412 430 411 430 0.89 12 26 0.28 23 7.2 0.5 1 18 439 456 439 461 0.91 13 26 0.0019 0.15 14.1 0.9 1 23 467 489 467 489 0.98 14 26 0.0091 0.74 11.9 0.5 1 21 519 539 519 540 0.94 15 26 0.00089 0.072 15.1 0.2 1 20 589 608 589 610 0.94 16 26 0.14 11 8.2 0.4 1 23 640 662 640 662 0.95 17 26 7.1 5.7e+02 2.8 0.1 5 23 755 774 753 774 0.91 18 26 0.00027 0.021 16.8 4.5 1 23 831 854 831 854 0.96 19 26 0.0057 0.46 12.6 0.1 2 23 876 898 875 898 0.91 20 26 6.2 5e+02 3.0 0.4 3 23 908 929 906 929 0.94 21 26 9.4e-05 0.0075 18.2 0.7 1 23 931 953 931 953 0.98 22 26 2.2e-06 0.00018 23.3 1.1 1 23 955 977 955 977 0.99 23 26 0.22 18 7.6 1.1 2 23 988 1006 987 1006 0.91 24 26 2.8 2.2e+02 4.1 0.1 1 16 1015 1030 1015 1032 0.78 25 26 0.0057 0.46 12.6 0.5 1 23 1043 1065 1043 1065 0.97 26 26 0.54 44 6.4 2.5 1 23 1071 1093 1071 1093 0.94
Sequence Information
- Coding Sequence
- ATGAGAAACATATTCTTGGGTGTAGCACAATTGAAAGTGGCAATGATGAAGAGTAGCGATGATAACTCTGGTAGTGAAATTGAACAAGACTTCATCATCCATACTTGTGAGGATTGTGATAAAGTGTTCGCTGACTATGCTGCATACCAAAATCACATCATTAATTGTTCAAAAGGAAATCAAAACAATGGTTTTGCTGTAAGAAGTGTAGAGAGGGCCGAGAAATTGAAAGTTGAAGGTGGTGAAGGACATACATTTGTTTGTTCTATGTGTTACGATGATTTTGAAACTGAAGAAGACTTGAAAATCCACAGATCAGTTCACAAAGAAGTGGAAATTTCAACTATGACTTTAATGACTCAAAATCATGAGACAAATAATTTTGTGAAAAGTGGAATGGTTCTTGGAAATACTGAAATGTCAGGAAATATAGAAGAAAATGAGATGATTAGGGAATTTATCAGTTTGACAGAAAGACAGGAGAATaggaattatgaaaaattttttACTGATGAAGCAACTTCTTGGTGTATTTATTGCGATGACACTTTTACTACACCATTGCTGTTGAACGAACACGTCAAAAAGCGACACCCTTCAATTGAGAAACCACGTTATGGTTGCATTTCTTGTAAAGAAACGAGCGCTAACCCGAATGGCTTACGTAAACATTACTTAAAGATGCATAGCaatgtttgttttatatgtCTAGAAGAGTTTCCAAATGCACAAGCAAAACTGGACCATGGGAAAACTCACAGATATACTTGTAAAATTTGCAAAACATCTTACTCTAGTTCATTTAATCTTCTAAAGCACTTAAGAGAGAAACATCCAAAAATATGGTCTCGCGATGAACCACAAAAAATGTTAGATAACGGTAATGAGATAACTTCATATTGCGTCTATTGTGACCAAACTTTTATTTCCCCACAAATGTTACAACAGCACTTGTACGAAATTCATTCTTCTATTAAGGACCCACGTTTCGGTTGCTTCTTGTGCAAAGAGTCGTTCTGCCAGAAATTAGTTCTTCGTAATCATATTCTAAGGAGACACAAATTTGTATGCGAGATATGTAAGAAGCAATTTACTAGTGAAGAAGAAAAACGGGAGCATAGGAAAACTCACAGATATACTTGCGAGGTTTGTAACAACAGCTATAGTCAATTGGCAGCACTGAGCAAGCACCTTAAAAGTCATGTTGGTAAGAAAGTGAAGGCAAAGAGGACAATGTGTGGTGACTGCGGAAAATTTTTCGTTGATATTAAAAATCACATGAAGACGCACAAAGAATTAAGCGCCCGTAAAAAATTCCCATGTCCTGAGTGCAACCAAATATTCATGTCTGCCTCTGGATTTAAAAGATGCATGGACCGTCACAAAGGAATAAAAAGATTTGAATGTGACGAGTGCGGCAAGAAATATTTTTACGAGCTGTCCCTTACGGTTCACAAAAGACTTCACACTGaagagaaaccGATAAACGGTCCAAAATTAACTTACAAAGATGGTAGCTCTATAACCACCAAGAATGTAGTGGAAAGTAAGAAGCATGTATGCAAAGGCTGCAACGGAAAATTCACTCGTCTTACTGCTTACGAGAGACACATACTTAGATGTAGCAAAATTGAAAGTGAAAATGATGAAGATCAGTTGACCGAATCAGACGATGATTCCGACGATGACTTTAGTGGTAAGAGTACTGATGATGAGAGCAGCGATGATAACTCTGATGGCAAAACTGAACAAGATTTCGTGGTCCATACTTGTGACAATTGTGATAAAGTGTTCACTGACTATGCTGCATACCAAAACCACGTCATTAAttgttcaaaagaaaatcaaaatgtttttgttgCAAAAAGAGTAGAGGGAGGTGAGAAATTGAAAGTTGAAGGTGATGAAGCAAACACATTTGTTTGTTCTACGTGTTACGATGCTTTTGAAACTAAAGAAGACTTGAAAATGCACGAATCTCTTCACAAGGAAGAAGAAATTTCACCTGCTTTAATGGCTCAAAATCATGGGAATTTGAAACGTCCAGTTAACCTCATGAAAAATGAAATGGTTCGTGGAGATATTGAAACATCAGGAAATATagttacttcggattgcgagGAAGAAATTGATGGAGAAGAAAATAAGATGATTACAGAATTTATCAGTGTAGAAGGCAACACAAAGTTCAGTTTAACGGAAAGACAGGAGAGGaggaattatgaaaaattttttACTGGTAAAATAACTTCTTGGTGCATTTATTGTGATGACACTTTTACTGCACCATTGCTGTTAAATCAACACATCAAAGAACGACATCCTTCCATTGAGAAACCACGTTATGGTTGTATTTCATGTAAAGGAACAAACTGTAACCCAGCTGGTTTGGTTAAACATTATTTAAGAAAACATAGCAATGTTTGCATTACATGCCTGGAAGAGTTTCCAAGTGCACAAGCGAAACTAGACCATGGAAAAACTCACAGATATACTTGCAAAATTTGCAACACGTCATATACTAGGTCGTTTCAGCTGATGCACCACTTAAAAGACAAACATCGAAAATTGTACTCTCGCGATGAACCACAAAAAATTATCGACAATGGTGATGAGACAACTTCATATTGTGCCTATTGTGAGCAAAGTTTTATTTCCCCACAACTGCTACAACAGCATTTAGATGAAATTCACCCTTCTATCAAGAAGCCGCGTTTTGGTTGTTTCTTGTGCAAAGAATCATATTCCGCAAAAATTATTCTTCGTAATCATATTTTAAGGCAACACAAATTCGTTTGCGGCATATGTAATAAGCAGTTTTCTAGTGAAGAAGAGAAACGAGAGCACATGAAAACTCATAGATATACTTGCGAGGTTTGTGGCAGAAGTTACAGTAGATTATCAAAACTCAATTCACATCTTAAAAGTCATGTTGGTAAGAAAGTGAAGGGGAAGAAGACAATGTGTGGTGACTGCGGAAAATTTTTTGTTGATGTTAAAACTCACATGAAGACGCATAAAGAATTGAGCACCCGCGAAAAATTTCCGTGCCCTGAGTGTAACCAAATATTTTTGTCTGCCTCTAGACTTAAAAGATGCATGGATCGCCACAAAGGGATAAAAAGATTTGAATGTGACGAGTGCGGCAAGAAATATTTCTACGAGGGGTCAATTACGATTCACAAAAGACTTCACACCGGAGAGAAACCTTTTCGCTGCAGTTATTGCGAGAGAAATTTCTACACTGACCAAATTTTATACAAACACACTTTGAGCCATGGAATTGACACTCGAGCAAAAGTATAA
- Protein Sequence
- MRNIFLGVAQLKVAMMKSSDDNSGSEIEQDFIIHTCEDCDKVFADYAAYQNHIINCSKGNQNNGFAVRSVERAEKLKVEGGEGHTFVCSMCYDDFETEEDLKIHRSVHKEVEISTMTLMTQNHETNNFVKSGMVLGNTEMSGNIEENEMIREFISLTERQENRNYEKFFTDEATSWCIYCDDTFTTPLLLNEHVKKRHPSIEKPRYGCISCKETSANPNGLRKHYLKMHSNVCFICLEEFPNAQAKLDHGKTHRYTCKICKTSYSSSFNLLKHLREKHPKIWSRDEPQKMLDNGNEITSYCVYCDQTFISPQMLQQHLYEIHSSIKDPRFGCFLCKESFCQKLVLRNHILRRHKFVCEICKKQFTSEEEKREHRKTHRYTCEVCNNSYSQLAALSKHLKSHVGKKVKAKRTMCGDCGKFFVDIKNHMKTHKELSARKKFPCPECNQIFMSASGFKRCMDRHKGIKRFECDECGKKYFYELSLTVHKRLHTEEKPINGPKLTYKDGSSITTKNVVESKKHVCKGCNGKFTRLTAYERHILRCSKIESENDEDQLTESDDDSDDDFSGKSTDDESSDDNSDGKTEQDFVVHTCDNCDKVFTDYAAYQNHVINCSKENQNVFVAKRVEGGEKLKVEGDEANTFVCSTCYDAFETKEDLKMHESLHKEEEISPALMAQNHGNLKRPVNLMKNEMVRGDIETSGNIVTSDCEEEIDGEENKMITEFISVEGNTKFSLTERQERRNYEKFFTGKITSWCIYCDDTFTAPLLLNQHIKERHPSIEKPRYGCISCKGTNCNPAGLVKHYLRKHSNVCITCLEEFPSAQAKLDHGKTHRYTCKICNTSYTRSFQLMHHLKDKHRKLYSRDEPQKIIDNGDETTSYCAYCEQSFISPQLLQQHLDEIHPSIKKPRFGCFLCKESYSAKIILRNHILRQHKFVCGICNKQFSSEEEKREHMKTHRYTCEVCGRSYSRLSKLNSHLKSHVGKKVKGKKTMCGDCGKFFVDVKTHMKTHKELSTREKFPCPECNQIFLSASRLKRCMDRHKGIKRFECDECGKKYFYEGSITIHKRLHTGEKPFRCSYCERNFYTDQILYKHTLSHGIDTRAKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -