Xruf009832.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43554243-43558998[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.48 39 6.5 0.4 3 23 18 35 16 35 0.80 2 20 0.00034 0.028 16.4 3.5 1 23 41 63 41 63 0.96 3 20 1.8e-05 0.0014 20.5 1.5 1 23 69 91 69 91 0.98 4 20 7.8e-07 6.3e-05 24.7 1.0 1 23 103 125 103 125 0.98 5 20 0.00028 0.022 16.7 0.7 1 23 131 154 131 154 0.94 6 20 0.00024 0.02 16.9 0.1 3 23 162 183 160 183 0.96 7 20 0.58 47 6.3 2.6 2 23 312 334 312 334 0.96 8 20 0.18 15 7.8 0.7 1 23 341 364 341 364 0.93 9 20 0.001 0.084 14.9 0.9 1 23 368 391 368 391 0.97 10 20 0.0005 0.041 15.9 2.6 1 23 398 420 398 420 0.95 11 20 0.39 31 6.8 4.0 2 23 428 450 428 450 0.95 12 20 3 2.4e+02 4.0 2.8 3 23 457 478 456 478 0.89 13 20 1.9e-05 0.0016 20.3 4.2 1 23 484 506 484 506 0.98 14 20 2.2 1.8e+02 4.4 0.5 3 23 520 537 518 537 0.70 15 20 0.0011 0.087 14.9 0.3 1 23 543 565 543 565 0.98 16 20 7.9e-05 0.0064 18.4 0.3 2 23 572 593 571 593 0.96 17 20 1.8e-05 0.0014 20.5 1.4 1 23 605 627 605 627 0.98 18 20 0.0013 0.1 14.6 0.6 1 23 633 656 633 656 0.91 19 20 0.00019 0.015 17.2 0.6 3 23 664 685 662 685 0.96 20 20 0.0071 0.57 12.3 1.9 1 23 691 714 691 714 0.97
Sequence Information
- Coding Sequence
- ATGTCCAGTCACGATCCCGAGAAAGGAAAGTACACTAGAAAACCTGTTGTCTGTGATATATGCGGTGTAGTAACTTCCCATCTTGCCAATCACTTAAAGAAACATTCGACTGTAAAACCGCACATTTGCAAACATTGTGGGAAAAGTTTCAAGCTGACTATCAATTTAGAGTTGCATCTAGAAAAGCACTTGCCCGAAAAGAAATTTTCCTGTTCTGTTTGCGACAAGAAATTCTCCAGTGAGTCGGCATTTCAAGTACATTCCAGGAAGCATGAAGAAGAGAAGGCACCTAGCGAACATCGGAAGTTTATGTGTTCCGATTGTGGAAAACTATTTGTCTTCAAAAGTTCTCTCACATGGCATATGCGTTCGCATAAGAGGGAAAGAAAGTATTCCTGCACAATATGCGATAGAACGTTCTTCATCAATCAGTCCTTGAAGAGGCACGTGCAAGGAGTCCATTTAAAACAGATGAACTGGGCCTGCCAACTTTGCGATAAGAAGTACACCCAAAGTGCTTCACTGGCACTCCACGTTAAGACAATTCATAGCCAAGAAAGACCCTTTGATTACAGGGACTCAGAGGCAGTAATAACATTTTTGATACCCGTAAATAAACAGAATGCTGCTTCAAATTCACCACAACTGTACATCCCCGTACAATTCAGGCCGACGAAGGAAAACACCACAAGTATCGTTGAACCAGTGCAAGTTAAAGAAACGACATTGTCCCCATTGGTGCCAGGAAATCCCATTCAACTTGGGCCGACGAGAAATGACACCACAGGAGTCGTCGAACCTAAGAAAAGGAGCACTCTGCGATTGGACCGAAGAAAATTAGTGAAAGTTAAATCTAGATCGAGAAAGGATGCCTCAAGGATCGCGGAAGCATTGCCAGTTAAGAAAAAGAAATTGCCGCCATTGGACATAAGAGAATGCGAAATTTGTCACGAGTTATTAGAAAATTACAGTAAGTACAGGAATCATAAAAGAAGGTTTCACAAATCCGATACACCAGAGTACCCTTGTTTCACTTGCAAGCAAACTTTTGAATCGATCGAGCTGCGACAGAAGCATAGACTGGAAGCGCATAATGAAACATATCAGTGCGATTACTGCGAAAGATTTTACACCAAGAGAGGGTTCCTAGAACAACATGTATTGAGCGTTCACAACGAATCGGCTTTGAAATTCAAGTGTCAGAATTGTAGGAAAGTGTTTCCTAGTGAAGAGAGCTTGAAGAAGCACGAAGAACACCACGAAGagaaaattagaataagaaAATGCCTGAAATGCAACTTGAGTTTCCAGTCACGGAATGAATACTTTGCCCATCACTCGAAGAGTCACTGGAGAAAGAAACCGTTGTGCCATATATGTTTTAAAAGATTTGAGACAGTGGAAGAATGCATAAATCACAGACAAGAAGTTCACGGTTCCGGTAAACGATTCGAATGCGAACATTGTGGTAAATTTTACGCGTCTAGGCACACTTTAACAGAACACATGTCGACTCATGATTCCAAGAAAGGGAAATATGTGAGAAAAATTTCTGTCTGTGAGATATGTGGAGTAACAACCCCGCATTTAGCCAATCATTTAAAAAAGCATTCCGATGATAAACAGTTCGTTTGTGAACATTGCGGTCAAGGTTACAAGCTCGCAGTTAGTTTAGAGTTGCACCAAGAGAAGCACTTGTCGGAAAAGAACATAAGCTGTACAGACTGCGACGAGAAATTCGCTAGGGAGTCTGCGCTTAAGATACATTTCATGAAGCACGAAGAAGAGAAGGCAACTGATGAAGATCGAAAGTTTACGTGTTCTAATTGCGGAAAATTGTTTGTTCACAGTACTTCCCTCGCAGTGCACATGCAGTCGCATAGGAAAGAAAGAAAGCATCCCTGTACGATGTGCGAGAAAAAGTTTTTCAGCAACGGCTCTTTGAAAATACATGTAGAGGGAGTCCATCTTAAAGATATGAAATGGGCCTGCCAGTTTTGCGATAAGAAGTACACCCAAAATGCTTCATTGGCACTCCACCTTAAGACAAAACATTCGCAAGAAAGACCCTTTGAGTGTGCTATTTGCTATAAAAAATTTGTCGCAAAGCACATGTTGGTGAAACACAACAGGGTCAAACACGGCAATATAAAAGAGGAAGCATAA
- Protein Sequence
- MSSHDPEKGKYTRKPVVCDICGVVTSHLANHLKKHSTVKPHICKHCGKSFKLTINLELHLEKHLPEKKFSCSVCDKKFSSESAFQVHSRKHEEEKAPSEHRKFMCSDCGKLFVFKSSLTWHMRSHKRERKYSCTICDRTFFINQSLKRHVQGVHLKQMNWACQLCDKKYTQSASLALHVKTIHSQERPFDYRDSEAVITFLIPVNKQNAASNSPQLYIPVQFRPTKENTTSIVEPVQVKETTLSPLVPGNPIQLGPTRNDTTGVVEPKKRSTLRLDRRKLVKVKSRSRKDASRIAEALPVKKKKLPPLDIRECEICHELLENYSKYRNHKRRFHKSDTPEYPCFTCKQTFESIELRQKHRLEAHNETYQCDYCERFYTKRGFLEQHVLSVHNESALKFKCQNCRKVFPSEESLKKHEEHHEEKIRIRKCLKCNLSFQSRNEYFAHHSKSHWRKKPLCHICFKRFETVEECINHRQEVHGSGKRFECEHCGKFYASRHTLTEHMSTHDSKKGKYVRKISVCEICGVTTPHLANHLKKHSDDKQFVCEHCGQGYKLAVSLELHQEKHLSEKNISCTDCDEKFARESALKIHFMKHEEEKATDEDRKFTCSNCGKLFVHSTSLAVHMQSHRKERKHPCTMCEKKFFSNGSLKIHVEGVHLKDMKWACQFCDKKYTQNASLALHLKTKHSQERPFECAICYKKFVAKHMLVKHNRVKHGNIKEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -